Human Gene KRTCAP2 (ENST00000295682.6_8) from GENCODE V47lift37
  Description: keratinocyte associated protein 2 (from RefSeq NM_173852.4)
Gencode Transcript: ENST00000295682.6_8
Gencode Gene: ENSG00000163463.13_10
Transcript (Including UTRs)
   Position: hg19 chr1:155,141,884-155,145,780 Size: 3,897 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr1:155,141,916-155,145,700 Size: 3,785 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:155,141,884-155,145,780)mRNA (may differ from genome)Protein (136 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KTAP2_HUMAN
DESCRIPTION: RecName: Full=Keratinocyte-associated protein 2; Short=KCP-2;
SUBUNIT: Component of the oligosaccharyltransferase (OST) complex. OST seems to exist in different forms which contain at least RPN1, RPN2, OST48, DAD1, OSTC, KRTCAP2 and either STT3A or STT3B. OST can form stable complexes with the Sec61 complex or with both the Sec61 and TRAP complexes (By similarity).
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein (Potential).
TISSUE SPECIFICITY: Expressed in skin, heart, placental, liver, skeletal muscle, kidney, pancreas, keratinocytes and dermal fibroblasts.
SIMILARITY: Belongs to the KRTCAP2 family.
CAUTION: It is uncertain whether Met-1 or Met-27 is the initiator.
SEQUENCE CAUTION: Sequence=AAO13161.2; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -32.1080-0.401 Picture PostScript Text
3' UTR -3.0032-0.094 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018614 - Uncharacterised_KRTCAP2

Pfam Domains:
PF09775 - Keratinocyte-associated protein 2

ModBase Predicted Comparative 3D Structure on Q8N6L1
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function

Biological Process:
GO:0006486 protein glycosylation
GO:0042543 protein N-linked glycosylation via arginine

Cellular Component:
GO:0005575 cellular_component
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0008250 oligosaccharyltransferase complex
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC048205 - Homo sapiens keratinocyte associated protein 2, mRNA (cDNA clone IMAGE:4128499), partial cds.
BX647396 - Homo sapiens mRNA; cDNA DKFZp686L09144 (from clone DKFZp686L09144).
BC029806 - Homo sapiens keratinocyte associated protein 2, mRNA (cDNA clone MGC:35430 IMAGE:5189880), complete cds.
AY157577 - Homo sapiens keratinocytes associated protein 2 (KCP2) mRNA, complete cds.
AK024167 - Homo sapiens cDNA FLJ14105 fis, clone MAMMA1001202, moderately similar to Keratinocytes-associated protein 2.
BC057233 - Homo sapiens keratinocyte associated protein 2, mRNA (cDNA clone MGC:62028 IMAGE:6463372), complete cds.
KJ906451 - Synthetic construct Homo sapiens clone ccsbBroadEn_16121 KRTCAP2 gene, encodes complete protein.
AK311907 - Homo sapiens cDNA, FLJ92173, Homo sapiens keratinocytes associated protein 2 (KCP2), mRNA.
KJ895790 - Synthetic construct Homo sapiens clone ccsbBroadEn_05184 KRTCAP2 gene, encodes complete protein.
DQ890793 - Synthetic construct clone IMAGE:100003423; FLH165980.01X; RZPDo839B0686D keratinocyte associated protein 2 (KRTCAP2) gene, encodes complete protein.
DQ893948 - Synthetic construct Homo sapiens clone IMAGE:100008408; FLH165978.01L; RZPDo839B0685D keratinocyte associated protein 2 (KRTCAP2) gene, encodes complete protein.
CU691196 - Synthetic construct Homo sapiens gateway clone IMAGE:100022348 5' read KRTCAP2 mRNA.
JD237125 - Sequence 218149 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B2R4Q1, ENST00000295682.1, ENST00000295682.2, ENST00000295682.3, ENST00000295682.4, ENST00000295682.5, KCP2, KTAP2_HUMAN, NM_173852, Q6PG45, Q86XW2, Q8IWS4, Q8N6L1, uc317lmz.1, uc317lmz.2
UCSC ID: ENST00000295682.6_8
RefSeq Accession: NM_173852.4
Protein: Q8N6L1 (aka KTAP2_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
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