Human Gene LIN52 (ENST00000553404.5_1) from GENCODE V47lift37
  Description: lin-52 DREAM MuvB core complex component (from HGNC LIN52)
Gencode Transcript: ENST00000553404.5_1
Gencode Gene: ENSG00000205659.12_12
Transcript (Including UTRs)
   Position: hg19 chr14:74,551,663-74,667,141 Size: 115,479 Total Exon Count: 5 Strand: +


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:74,551,663-74,667,141)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblExonPrimerHGNCPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.68 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 198.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC094003 - Homo sapiens lin-52 homolog (C. elegans), mRNA (cDNA clone MGC:121038 IMAGE:7939848), complete cds.
BC094005 - Homo sapiens lin-52 homolog (C. elegans), mRNA (cDNA clone MGC:121040 IMAGE:7939850), complete cds.
AK307062 - Homo sapiens cDNA, FLJ97010.
AK055422 - Homo sapiens cDNA FLJ30860 fis, clone FEBRA2003470.
KJ895166 - Synthetic construct Homo sapiens clone ccsbBroadEn_04560 LIN52 gene, encodes complete protein.
AK023979 - Homo sapiens cDNA FLJ13917 fis, clone Y79AA1000355, highly similar to 12.5 kDa retinal tissue protein.
BC009539 - Homo sapiens chromosome 14 open reading frame 46, mRNA (cDNA clone IMAGE:3893542), partial cds.
DQ591200 - Homo sapiens piRNA piR-58312, complete sequence.
JD465671 - Sequence 446695 from Patent EP1572962.
JD487637 - Sequence 468661 from Patent EP1572962.
JD534595 - Sequence 515619 from Patent EP1572962.
JD097627 - Sequence 78651 from Patent EP1572962.
JD339353 - Sequence 320377 from Patent EP1572962.
JD363054 - Sequence 344078 from Patent EP1572962.
DQ582872 - Homo sapiens piRNA piR-32984, complete sequence.
JD142717 - Sequence 123741 from Patent EP1572962.
JD183705 - Sequence 164729 from Patent EP1572962.
JD320363 - Sequence 301387 from Patent EP1572962.
JD509427 - Sequence 490451 from Patent EP1572962.
JD198925 - Sequence 179949 from Patent EP1572962.
JD555981 - Sequence 537005 from Patent EP1572962.
JD263823 - Sequence 244847 from Patent EP1572962.
JD352293 - Sequence 333317 from Patent EP1572962.
JD020557 - Sequence 1581 from Patent EP1572962.
JD561403 - Sequence 542427 from Patent EP1572962.
JD179214 - Sequence 160238 from Patent EP1572962.
JD075045 - Sequence 56069 from Patent EP1572962.
JD083206 - Sequence 64230 from Patent EP1572962.
JD377730 - Sequence 358754 from Patent EP1572962.
JD455034 - Sequence 436058 from Patent EP1572962.
JD378166 - Sequence 359190 from Patent EP1572962.
JD131046 - Sequence 112070 from Patent EP1572962.
JD079654 - Sequence 60678 from Patent EP1572962.
JD197168 - Sequence 178192 from Patent EP1572962.
JD506634 - Sequence 487658 from Patent EP1572962.
JD484809 - Sequence 465833 from Patent EP1572962.
JD447062 - Sequence 428086 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK055422, ENST00000553404.1, ENST00000553404.2, ENST00000553404.3, ENST00000553404.4, uc325elp.1
UCSC ID: ENST00000553404.5_1
RefSeq Accession: NM_001024674.3

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.