Human Gene LRP8 (ENST00000306052.12_13) from GENCODE V47lift37
  Description: LDL receptor related protein 8, transcript variant 1 (from RefSeq NM_004631.5)
Gencode Transcript: ENST00000306052.12_13
Gencode Gene: ENSG00000157193.18_22
Transcript (Including UTRs)
   Position: hg19 chr1:53,708,036-53,793,742 Size: 85,707 Total Exon Count: 19 Strand: -
Coding Region
   Position: hg19 chr1:53,712,690-53,793,584 Size: 80,895 Coding Exon Count: 19 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:53,708,036-53,793,742)mRNA (may differ from genome)Protein (963 aa)
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ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: LRP8_HUMAN
DESCRIPTION: RecName: Full=Low-density lipoprotein receptor-related protein 8; Short=LRP-8; AltName: Full=Apolipoprotein E receptor 2; Flags: Precursor;
FUNCTION: Cell surface receptor for Reelin (RELN) and apolipoprotein E (apoE)-containing ligands. LRP8 participates in transmitting the extracellular Reelin signal to intracellular signaling processes, by binding to DAB1 on its cytoplasmic tail. Reelin acts via both the VLDL receptor (VLDLR) and LRP8 to regulate DAB1 tyrosine phosphorylation and microtubule function in neurons. LRP8 has higher affinity for Reelin than VLDLR. LRP8 is thus a key component of the Reelin pathway which governs neuronal layering of the forebrain during embryonic brain development. Binds the endoplasmic reticulum resident receptor-associated protein (RAP). Binds dimers of beta 2-glycoprotein I and may be involved in the suppression of platelet aggregation in the vasculature. Highly expressed in the initial segment of the epididymis, where it affects the functional expression of clusterin and phospholipid hydroperoxide glutathione peroxidase (PHGPx), two proteins required for sperm maturation. May also function as an endocytic receptor.
SUBUNIT: Reelin associates with two or more receptor molecules. Interacts with DAB1 and JNK-interacting proteins. Interacts with SNX17 (By similarity). Interacts with PCSK9.
SUBCELLULAR LOCATION: Cell membrane; Single-pass type I membrane protein (By similarity). Secreted (By similarity). Note=Isoforms that contain the exon coding for a furin-type cleavage site are proteolytically processed, leading to a secreted receptor fragment (By similarity).
TISSUE SPECIFICITY: Expressed mainly in brain and placenta. Also expressed in platelets and megakaryocytic cells. Not expressed in the liver.
DOMAIN: The cytoplasmic domain is involved in the binding of DAB1 and in the recruitment of JNK-interacting proteins. Isoforms, which lack part of the cytoplasmic domain, are unable to recruit members of the family of JNK interacting proteins (JIP) to the cytoplasmic tail (By similarity).
PTM: O-glycosylated. Some alternatively spliced isoforms lack the O-linked sugar domain (By similarity).
PTM: Undergoes sequential, furin and gamma-secretase dependent, proteolytic processing, resulting in the extracellular release of the entire ligand-binding domain as a soluble polypeptide and in the intracellular domain (ICD) release into the cytoplasm. The gamma-secretase-dependent proteolytical processing occurs after the bulk of the extracellular domain has been shed, in a furin- dependent manner, in alternatively spliced isoforms carrying the furin cleavage site. Hypoglycosylation (mainly hypo-O- glycosylation) leads to increased extracellular cleavage, which in turn results in accelerating release of the intracellular domain (ICD) by the gamma-secretase. The resulting receptor fragment is able to inhibit Reelin signaling and in particular the Reelin- induced DAB1 phosphorylation (By similarity).
PTM: Tyrosine phosphorylated upon apoE binding.
PTM: Ubiquitinated by MYLIP leading to degradation.
DISEASE: Defects in LRP8 are a cause of myocardial infarction type 1 (MCI1) [MIM:608446]. A condition defined by the irreversible necrosis of heart muscle secondary to prolonged ischemia.
MISCELLANEOUS: Natural isoforms of apoE (E2, E3, E4) have similar affinities for LRP8.
SIMILARITY: Belongs to the LDLR family.
SIMILARITY: Contains 2 EGF-like domains.
SIMILARITY: Contains 7 LDL-receptor class A domains.
SIMILARITY: Contains 5 LDL-receptor class B repeats.
SEQUENCE CAUTION: Sequence=CAA99509.1; Type=Frameshift; Positions=430, 432, 438;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: LRP8
Diseases sorted by gene-association score: myocardial infarction* (267), myocardial infarction, susceptibility to, 1* (58), osteoporosis-pseudoglioma syndrome (17), lissencephaly (8), lissencephaly with cerebellar hypoplasia (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D001564 Benzo(a)pyrene
  • D013749 Tetrachlorodibenzodioxin
  • C111118 2',3,3',4',5-pentachloro-4-hydroxybiphenyl
  • C532162 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine
  • C012796 2-butenal
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • D016604 Aflatoxin B1
  • D002251 Carbon Tetrachloride
  • D003300 Copper
  • D019327 Copper Sulfate
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.65 RPKM in Testis
Total median expression: 143.44 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -91.80158-0.581 Picture PostScript Text
3' UTR -1259.704654-0.271 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011042 - 6-blade_b-propeller_TolB-like
IPR000742 - EG-like_dom
IPR001881 - EGF-like_Ca-bd
IPR013032 - EGF-like_CS
IPR000152 - EGF-type_Asp/Asn_hydroxyl_site
IPR018097 - EGF_Ca-bd_CS
IPR009030 - Growth_fac_rcpt
IPR023415 - LDLR_class-A_CS
IPR000033 - LDLR_classB_rpt
IPR002172 - LDrepeatLR_classA_rpt

Pfam Domains:
PF00057 - Low-density lipoprotein receptor domain class A
PF00058 - Low-density lipoprotein receptor repeat class B
PF07645 - Calcium-binding EGF domain
PF12662 - Complement Clr-like EGF-like
PF14670 - Coagulation Factor Xa inhibitory site

SCOP Domains:
50952 - Soluble quinoprotein glucose dehydrogenase
50956 - Thermostable phytase (3-phytase)
50960 - TolB, C-terminal domain
63825 - YWTD domain
63829 - Calcium-dependent phosphotriesterase
69304 - Tricorn protease N-terminal domain
101898 - NHL repeat
75011 - 3-carboxy-cis,cis-mucoante lactonizing enzyme
101908 - Putative isomerase YbhE
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase
50974 - Nitrous oxide reductase, N-terminal domain
50978 - WD40 repeat-like
69322 - Tricorn protease domain 2
50998 - Quinoprotein alcohol dehydrogenase-like
51004 - C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
82171 - DPP6 N-terminal domain-like
57424 - LDL receptor-like module
57196 - EGF/Laminin
57184 - Growth factor receptor domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3A7Q - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q14114
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004888 transmembrane signaling receptor activity
GO:0005041 low-density lipoprotein receptor activity
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0008035 high-density lipoprotein particle binding
GO:0019894 kinesin binding
GO:0030229 very-low-density lipoprotein particle receptor activity
GO:0034185 apolipoprotein binding
GO:0038025 reelin receptor activity

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001523 retinoid metabolic process
GO:0006508 proteolysis
GO:0006629 lipid metabolic process
GO:0006897 endocytosis
GO:0006898 receptor-mediated endocytosis
GO:0007165 signal transduction
GO:0019221 cytokine-mediated signaling pathway
GO:0021541 ammon gyrus development
GO:0021987 cerebral cortex development
GO:0032793 positive regulation of CREB transcription factor activity
GO:0038026 reelin-mediated signaling pathway
GO:0042493 response to drug
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation
GO:0050804 modulation of synaptic transmission
GO:0061003 positive regulation of dendritic spine morphogenesis
GO:0061098 positive regulation of protein tyrosine kinase activity
GO:0071363 cellular response to growth factor stimulus
GO:0071397 cellular response to cholesterol
GO:1900006 positive regulation of dendrite development

Cellular Component:
GO:0005576 extracellular region
GO:0005875 microtubule associated complex
GO:0005886 plasma membrane
GO:0005901 caveola
GO:0014069 postsynaptic density
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030424 axon
GO:0030425 dendrite
GO:0043025 neuronal cell body
GO:0043235 receptor complex


-  Descriptions from all associated GenBank mRNAs
  HZ466382 - JP 2015532642-A/6: MicroRNAs that Suppress Human Melanoma.
HZ466383 - JP 2015532642-A/7: MicroRNAs that Suppress Human Melanoma.
HZ466384 - JP 2015532642-A/8: MicroRNAs that Suppress Human Melanoma.
HZ466385 - JP 2015532642-A/9: MicroRNAs that Suppress Human Melanoma.
LP722498 - Sequence 11 from Patent EP2882496.
LP722500 - Sequence 13 from Patent EP2882496.
LP722502 - Sequence 15 from Patent EP2882496.
LP722504 - Sequence 17 from Patent EP2882496.
D50678 - Homo sapiens mRNA for apolipoprotein E receptor 2, complete cds.
BC051836 - Homo sapiens low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, mRNA (cDNA clone MGC:60136 IMAGE:6143442), complete cds.
AK096482 - Homo sapiens cDNA FLJ39163 fis, clone OCBBF2002615, highly similar to Low-density lipoprotein receptor-related protein 8 precursor.
Z75190 - H.sapiens mRNA for apolipoprotein E receptor 2.
MA622447 - JP 2018140982-A/6: MicroRNAs that Suppress Human Melanoma.
MA622448 - JP 2018140982-A/7: MicroRNAs that Suppress Human Melanoma.
MA622449 - JP 2018140982-A/8: MicroRNAs that Suppress Human Melanoma.
MA622450 - JP 2018140982-A/9: MicroRNAs that Suppress Human Melanoma.
MP557062 - Sequence 11 from Patent EP3626309.
MP557064 - Sequence 13 from Patent EP3626309.
MP557066 - Sequence 15 from Patent EP3626309.
MP557068 - Sequence 17 from Patent EP3626309.
BC006443 - Homo sapiens, Similar to low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, clone IMAGE:3534195, mRNA, partial cds.
JD339082 - Sequence 320106 from Patent EP1572962.
JD314863 - Sequence 295887 from Patent EP1572962.
JD491656 - Sequence 472680 from Patent EP1572962.
JD369165 - Sequence 350189 from Patent EP1572962.
JD365525 - Sequence 346549 from Patent EP1572962.
JD197927 - Sequence 178951 from Patent EP1572962.
JD232850 - Sequence 213874 from Patent EP1572962.
JD323948 - Sequence 304972 from Patent EP1572962.
JD503899 - Sequence 484923 from Patent EP1572962.
JD093595 - Sequence 74619 from Patent EP1572962.
AK122887 - Homo sapiens cDNA FLJ16536 fis, clone OCBBF2032152, highly similar to Homo sapiens low density lipoprotein receptor-related protein 8, apolipoprotein e receptor (LRP8).
JD407051 - Sequence 388075 from Patent EP1572962.
JD407050 - Sequence 388074 from Patent EP1572962.
JD095135 - Sequence 76159 from Patent EP1572962.
JD407402 - Sequence 388426 from Patent EP1572962.
JD138731 - Sequence 119755 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_Lis1Pathway - Lissencephaly gene (LIS1) in neuronal migration and development
h_reelinPathway - Reelin Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein Q14114 (Reactome details) participates in the following event(s):

R-HSA-432121 LDL binds to LRP8
R-HSA-8948034 FGR binds LDL:LRP8
R-HSA-432129 FGR binds and phosphorylates LRP8
R-HSA-2404131 LRPs transport extracellular CR:atREs:HSPG:apoE to cytosol
R-HSA-432142 Platelet sensitization by LDL
R-HSA-418346 Platelet homeostasis
R-HSA-975634 Retinoid metabolism and transport
R-HSA-109582 Hemostasis
R-HSA-2187338 Visual phototransduction
R-HSA-6806667 Metabolism of fat-soluble vitamins
R-HSA-418594 G alpha (i) signalling events
R-HSA-196854 Metabolism of vitamins and cofactors
R-HSA-388396 GPCR downstream signalling
R-HSA-1430728 Metabolism
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: APOER2, B1AMT6, B1AMT7, B1AMT8, ENST00000306052.1, ENST00000306052.10, ENST00000306052.11, ENST00000306052.2, ENST00000306052.3, ENST00000306052.4, ENST00000306052.5, ENST00000306052.6, ENST00000306052.7, ENST00000306052.8, ENST00000306052.9, LRP8_HUMAN, NM_004631, O14968, Q14114, Q86V27, Q99876, Q9BR78, uc317nte.1, uc317nte.2
UCSC ID: ENST00000306052.12_13
RefSeq Accession: NM_004631.5
Protein: Q14114 (aka LRP8_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.