Human Gene LY75 (ENST00000263636.5_7) from GENCODE V47lift37
  Description: lymphocyte antigen 75 (from RefSeq NM_002349.4)
Gencode Transcript: ENST00000263636.5_7
Gencode Gene: ENSG00000054219.11_10
Transcript (Including UTRs)
   Position: hg19 chr2:160,659,866-160,761,267 Size: 101,402 Total Exon Count: 35 Strand: -
Coding Region
   Position: hg19 chr2:160,661,555-160,761,193 Size: 99,639 Coding Exon Count: 35 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:160,659,866-160,761,267)mRNA (may differ from genome)Protein (1722 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: LY75_HUMAN
DESCRIPTION: RecName: Full=Lymphocyte antigen 75; Short=Ly-75; AltName: Full=C-type lectin domain family 13 member B; AltName: Full=DEC-205; AltName: Full=gp200-MR6; AltName: CD_antigen=CD205; Flags: Precursor;
FUNCTION: Acts as an endocytic receptor to direct captured antigens from the extracellular space to a specialized antigen- processing compartment (By similarity). Causes reduced proliferation of B-lymphocytes.
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein (By similarity).
TISSUE SPECIFICITY: Expressed in spleen, thymus, colon and peripheral blood lymphocytes. Detected in myeloid and B-lymphoid cell lines. Isoform 2 and isoform 3 are expressed in malignant Hodgkin lymphoma cells called Hodgkin and Reed-Sternberg (HRS) cells.
PTM: N-glycosylated.
MISCELLANEOUS: Isoform 2 and isoform 3 are produced in HRS cells by a transcriptional control mechanism which cotranscribe an mRNA containing LY75 and CD302 prior to generating the intergenically spliced mRNA to produce LY75/CD302 fusion proteins.
SIMILARITY: Contains 10 C-type lectin domains.
SIMILARITY: Contains 1 fibronectin type-II domain.
SIMILARITY: Contains 1 ricin B-type lectin domain.
WEB RESOURCE: Name=Functional Glycomics Gateway - Glycan Binding; Note=DEC-205; URL="http://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Ctlect_250";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: LY75
Diseases sorted by gene-association score: pneumonic plague (17), lipid pneumonia (15), hodgkin lymphoma (9), atrial septal defect 1 (9), adenoiditis (8), atrial septal defect 2 (7), aspiration pneumonitis (7), amelogenesis imperfecta, type iv (6), langerhans cell sarcoma (6), retinitis pigmentosa 75 (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 38.59 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 120.29 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -31.5074-0.426 Picture PostScript Text
3' UTR -400.101689-0.237 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001304 - C-type_lectin
IPR016186 - C-type_lectin-like
IPR018378 - C-type_lectin_CS
IPR016187 - C-type_lectin_fold
IPR000562 - FN_type2_col-bd
IPR013806 - Kringle-like
IPR000772 - Ricin_B_lectin

Pfam Domains:
PF00040 - Fibronectin type II domain
PF00059 - Lectin C-type domain

SCOP Domains:
50370 - Ricin B-like lectins
56436 - C-type lectin-like
57440 - Kringle-like

ModBase Predicted Comparative 3D Structure on O60449
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004888 transmembrane signaling receptor activity
GO:0005515 protein binding
GO:0030246 carbohydrate binding
GO:0038023 signaling receptor activity

Biological Process:
GO:0006897 endocytosis
GO:0006954 inflammatory response
GO:0006955 immune response
GO:0007165 signal transduction

Cellular Component:
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AY184222 - Homo sapiens DEC-205/DCL-1 fusion protein variant V34-2 mRNA, complete cds.
AY314006 - Homo sapiens DEC-205/DCL-1 fusion protein variant V33-2 mRNA, complete cds.
LF205706 - JP 2014500723-A/13209: Polycomb-Associated Non-Coding RNAs.
AB208915 - Homo sapiens mRNA for lymphocyte antigen 75 variant protein.
AF011333 - Homo sapiens DEC-205 mRNA, complete cds.
LP895412 - Sequence 276 from Patent EP3253886.
AF064827 - Homo sapiens gp200-MR6 mRNA, complete cds.
BC172265 - Synthetic construct Homo sapiens clone IMAGE:100068959, MGC:198970 lymphocyte antigen 75 (LY75) mRNA, encodes complete protein.
MA441283 - JP 2018138019-A/13209: Polycomb-Associated Non-Coding RNAs.
JD148754 - Sequence 129778 from Patent EP1572962.
LF347376 - JP 2014500723-A/154879: Polycomb-Associated Non-Coding RNAs.
LF347377 - JP 2014500723-A/154880: Polycomb-Associated Non-Coding RNAs.
LF347378 - JP 2014500723-A/154881: Polycomb-Associated Non-Coding RNAs.
JD350721 - Sequence 331745 from Patent EP1572962.
JD285675 - Sequence 266699 from Patent EP1572962.
JD242291 - Sequence 223315 from Patent EP1572962.
JD106883 - Sequence 87907 from Patent EP1572962.
JD342309 - Sequence 323333 from Patent EP1572962.
JD207542 - Sequence 188566 from Patent EP1572962.
JD285380 - Sequence 266404 from Patent EP1572962.
JD072177 - Sequence 53201 from Patent EP1572962.
JD285379 - Sequence 266403 from Patent EP1572962.
JD505088 - Sequence 486112 from Patent EP1572962.
JD345584 - Sequence 326608 from Patent EP1572962.
JD150826 - Sequence 131850 from Patent EP1572962.
JD463025 - Sequence 444049 from Patent EP1572962.
JD212907 - Sequence 193931 from Patent EP1572962.
JD407512 - Sequence 388536 from Patent EP1572962.
JD059555 - Sequence 40579 from Patent EP1572962.
JD256733 - Sequence 237757 from Patent EP1572962.
JD152193 - Sequence 133217 from Patent EP1572962.
JD526251 - Sequence 507275 from Patent EP1572962.
JD352936 - Sequence 333960 from Patent EP1572962.
JD212906 - Sequence 193930 from Patent EP1572962.
JD352935 - Sequence 333959 from Patent EP1572962.
JD513515 - Sequence 494539 from Patent EP1572962.
JD293277 - Sequence 274301 from Patent EP1572962.
JD562124 - Sequence 543148 from Patent EP1572962.
JD428313 - Sequence 409337 from Patent EP1572962.
JD153608 - Sequence 134632 from Patent EP1572962.
JD262512 - Sequence 243536 from Patent EP1572962.
JD457427 - Sequence 438451 from Patent EP1572962.
JD259782 - Sequence 240806 from Patent EP1572962.
JD154323 - Sequence 135347 from Patent EP1572962.
JD566861 - Sequence 547885 from Patent EP1572962.
JD075234 - Sequence 56258 from Patent EP1572962.
JD086802 - Sequence 67826 from Patent EP1572962.
JD235307 - Sequence 216331 from Patent EP1572962.
JD553208 - Sequence 534232 from Patent EP1572962.
LF347380 - JP 2014500723-A/154883: Polycomb-Associated Non-Coding RNAs.
LF347381 - JP 2014500723-A/154884: Polycomb-Associated Non-Coding RNAs.
LF347382 - JP 2014500723-A/154885: Polycomb-Associated Non-Coding RNAs.
LF347384 - JP 2014500723-A/154887: Polycomb-Associated Non-Coding RNAs.
LF347385 - JP 2014500723-A/154888: Polycomb-Associated Non-Coding RNAs.
LF347388 - JP 2014500723-A/154891: Polycomb-Associated Non-Coding RNAs.
MA582953 - JP 2018138019-A/154879: Polycomb-Associated Non-Coding RNAs.
MA582954 - JP 2018138019-A/154880: Polycomb-Associated Non-Coding RNAs.
MA582955 - JP 2018138019-A/154881: Polycomb-Associated Non-Coding RNAs.
MA582957 - JP 2018138019-A/154883: Polycomb-Associated Non-Coding RNAs.
MA582958 - JP 2018138019-A/154884: Polycomb-Associated Non-Coding RNAs.
MA582959 - JP 2018138019-A/154885: Polycomb-Associated Non-Coding RNAs.
MA582961 - JP 2018138019-A/154887: Polycomb-Associated Non-Coding RNAs.
MA582962 - JP 2018138019-A/154888: Polycomb-Associated Non-Coding RNAs.
MA582965 - JP 2018138019-A/154891: Polycomb-Associated Non-Coding RNAs.
LF347389 - JP 2014500723-A/154892: Polycomb-Associated Non-Coding RNAs.
LF347390 - JP 2014500723-A/154893: Polycomb-Associated Non-Coding RNAs.
LF347392 - JP 2014500723-A/154895: Polycomb-Associated Non-Coding RNAs.
LF347393 - JP 2014500723-A/154896: Polycomb-Associated Non-Coding RNAs.
AK310678 - Homo sapiens cDNA, FLJ17720.
LF347397 - JP 2014500723-A/154900: Polycomb-Associated Non-Coding RNAs.
BC057232 - Homo sapiens cDNA clone IMAGE:6457967, partial cds.
MA582966 - JP 2018138019-A/154892: Polycomb-Associated Non-Coding RNAs.
MA582967 - JP 2018138019-A/154893: Polycomb-Associated Non-Coding RNAs.
MA582969 - JP 2018138019-A/154895: Polycomb-Associated Non-Coding RNAs.
MA582970 - JP 2018138019-A/154896: Polycomb-Associated Non-Coding RNAs.
MA582974 - JP 2018138019-A/154900: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: CD205, CLEC13B, ENST00000263636.1, ENST00000263636.2, ENST00000263636.3, ENST00000263636.4, LY75_HUMAN, NM_002349, O60449, O75913, Q53R46, Q53TF5, Q7Z575, Q7Z577, uc317hlb.1, uc317hlb.2
UCSC ID: ENST00000263636.5_7
RefSeq Accession: NM_002349.4
Protein: O60449 (aka LY75_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.