Human Gene MACROD1 (ENST00000255681.7_9) from GENCODE V47lift37
  Description: mono-ADP ribosylhydrolase 1 (from RefSeq NM_014067.4)
Gencode Transcript: ENST00000255681.7_9
Gencode Gene: ENSG00000133315.12_13
Transcript (Including UTRs)
   Position: hg19 chr11:63,766,030-63,933,585 Size: 167,556 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg19 chr11:63,766,340-63,933,466 Size: 167,127 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:63,766,030-63,933,585)mRNA (may differ from genome)Protein (325 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MACD1_HUMAN
DESCRIPTION: RecName: Full=O-acetyl-ADP-ribose deacetylase MACROD1; EC=3.5.1.-; AltName: Full=MACRO domain-containing protein 1; AltName: Full=Protein LRP16;
FUNCTION: Deacetylates O-acetyl-ADP ribose, a signaling molecule generated by the deacetylation of acetylated lysine residues in histones and other proteins. Plays a role in estrogen signaling. Binds to androgen receptor (AR) and amplifies the transactivation function of AR in response to androgen. May play an important role in carcinogenesis and/or progression of hormone-dependent cancers by feed-forward mechanism that activates ESR1 transactivation. Could be an ESR1 coactivator, providing a positive feedback regulatory loop for ESR1 signal transduction. Could be involved in invasive growth by down-regulating CDH1 in endometrial cancer cells. Enhances ESR1-mediated transcription activity.
ENZYME REGULATION: Subject to competitive inhibition by the product ADP-ribose.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=373 uM for O-acetyl-ADP-ribose;
SUBUNIT: Interacts with ESR1; Interacts in a manner that is estrogen independent but is enhanced by estrogen. Interacts (via macro domain) with AR.
INTERACTION: P03372:ESR1; NbExp=4; IntAct=EBI-5324932, EBI-78473;
INDUCTION: Overexpressed by estrogens in breast cancer MCF-7 cells, probably via an activation of nuclear receptors for steroids (ESR1 but not ESR2). Significantly increased by estrogens in ESR1-positive Ishikawa endometrial cancer cells. Up-regulated in 17-beta-estradiol-responsive BG-1 ovarian cancer cells but down-regulated in estrogen-resistant SKOV3 ovarian cancer cells. Induced by androgen.
DISEASE: Note=A chromosomal aberration involving MACROD1 is found in acute leukemia. Translocation t(11;21)(q13;q22) that forms a RUNX1-MACROD1 fusion protein.
MISCELLANEOUS: Overexpression may promote MCF-7 cells proliferation. There is an approximate one-third increase of the invasive capacity of MACROD1-overexpressing cells. The expression of CDH1 is repressed by MACROD1. Further analyzes demonstrats that MACROD1 inhibits CDH1 transactivation in a dose dependent manner. Inhibition is abolished by estrogen deprivation, indicating that the down-regulation of CDH1 transcription by MACROD1 requires ESR1 mediation. Binding of ESR1 to the CDH1 promoter is antagonized by MACROD1, suggesting that MACROD1 could interfere with ESR1- mediated transcription. Knockdown of MACROD1 leads to impaired AR function and greatly attenuates the coactivation of AR by other AR coactivators such as UXT and NCOA1. This interference also markedly inhibits the androgen-stimulated proliferation of androgen-sensitive LNCaP prostate cancer cells. MACROD1 knockdown does not significantly affect the growth rate of AR-negative PC-3 prostate cancer cells.
SIMILARITY: Contains 1 Macro domain.
SEQUENCE CAUTION: Sequence=AAH03188.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAH03188.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 63.34 RPKM in Muscle - Skeletal
Total median expression: 526.63 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -44.20119-0.371 Picture PostScript Text
3' UTR -46.80160-0.292 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002589 - A1pp

Pfam Domains:
PF01661 - Macro domain

SCOP Domains:
52949 - Macro domain-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2X47 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9BQ69
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0016787 hydrolase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0019213 deacetylase activity

Biological Process:
GO:0006974 cellular response to DNA damage stimulus
GO:0042278 purine nucleoside metabolic process
GO:0051725 protein de-ADP-ribosylation

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm


-  Descriptions from all associated GenBank mRNAs
  BC003188 - Homo sapiens MACRO domain containing 1, mRNA (cDNA clone MGC:748 IMAGE:3502054), complete cds.
AF202922 - Homo sapiens LRP16 (LRP16) mRNA, complete cds.
BC000270 - Homo sapiens MACRO domain containing 1, mRNA (cDNA clone MGC:3203 IMAGE:3357931), complete cds.
BC007297 - Homo sapiens MACRO domain containing 1, mRNA (cDNA clone MGC:15674 IMAGE:3349763), complete cds.
BC008316 - Homo sapiens MACRO domain containing 1, mRNA (cDNA clone MGC:15615 IMAGE:3342973), complete cds.
KJ902498 - Synthetic construct Homo sapiens clone ccsbBroadEn_11892 MACROD1 gene, encodes complete protein.
AF086206 - Homo sapiens full length insert cDNA clone ZC46E07.
JD188556 - Sequence 169580 from Patent EP1572962.
JD066242 - Sequence 47266 from Patent EP1572962.
JD175346 - Sequence 156370 from Patent EP1572962.
JD187092 - Sequence 168116 from Patent EP1572962.
JD065080 - Sequence 46104 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000255681.1, ENST00000255681.2, ENST00000255681.3, ENST00000255681.4, ENST00000255681.5, ENST00000255681.6, LRP16, MACD1_HUMAN, MACROD1 , NM_014067, Q9BQ69, Q9UH96, uc317fsr.1, uc317fsr.2
UCSC ID: ENST00000255681.7_9
RefSeq Accession: NM_014067.4
Protein: Q9BQ69 (aka MACD1_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.