Human Gene MAP1S (ENST00000324096.9_8) from GENCODE V47lift37
  Description: microtubule associated protein 1S, transcript variant 1 (from RefSeq NM_018174.6)
Gencode Transcript: ENST00000324096.9_8
Gencode Gene: ENSG00000130479.11_14
Transcript (Including UTRs)
   Position: hg19 chr19:17,830,289-17,845,322 Size: 15,034 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr19:17,830,312-17,845,237 Size: 14,926 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:17,830,289-17,845,322)mRNA (may differ from genome)Protein (1059 aa)
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-  Comments and Description Text from UniProtKB
  ID: MAP1S_HUMAN
DESCRIPTION: RecName: Full=Microtubule-associated protein 1S; Short=MAP-1S; AltName: Full=BPY2-interacting protein 1; AltName: Full=Microtubule-associated protein 8; AltName: Full=Variable charge Y chromosome 2-interacting protein 1; Short=VCY2-interacting protein 1; Short=VCY2IP-1; Contains: RecName: Full=MAP1S heavy chain; Contains: RecName: Full=MAP1S light chain;
FUNCTION: Microtubule-associated protein that mediates aggregation of mitochondria resulting in cell death and genomic destruction (MAGD). Plays a role in anchoring the microtubule-organizing center to the centrosomes. Binds to DNA. Plays a role in apoptosis. Involved in the formation of microtubule bundles (By similarity).
SUBUNIT: Heterodimer of a heavy and a light chain. Interacts with microtubules and actin. Both MAP1S heavy and light chains interact with microtubules. MAP1S light chain interacts with actin. Interacts (via C-terminus) with GAN (via Kelch domains) (By similarity). Interacts with ESR1, LRPPRC, RASSF1 isoform A and isoform C, microtubules and VCY2. Interacts with WDR47 (via N- terminus of light chain).
INTERACTION: O14599:BPY2B; NbExp=3; IntAct=EBI-2133734, EBI-2133713;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm, cytosol. Cytoplasm, cytoskeleton. Cytoplasm, cytoskeleton, spindle. Note=Detected in filopodia-like protrusions and synapses (By similarity). Detected in perinuclear punctate network corresponding to mitochondrial aggregates and in the nucleus in cells exhibiting apoptosis. Associated specifically with microtubules stabilized by paclitaxel and colocalizes with RASSF1 isoform A. In interphase cells, shows a diffuse cytoplasmic staining with partial localization to the microtubules. During the different stages of mitosis detected at the spindle microtubules.
TISSUE SPECIFICITY: Expressed in neurons (at protein level). Expressed in spermatocytes, spermatids and spermatozoa. Expressed in the cerebral cortex. Highly expressed in testis. Moderately expressed in the brain, colon, heart, kidney, liver, lung, placenta, small intestine, spleen and stomach. Weakly expressed in muscle.
DOMAIN: The N-terminus of the heavy chain associates with the C- terminus of the light chain to form the heterodimer complex (By similarity). Its C-terminal part of the heavy chain interacts with ESR1.
MISCELLANEOUS: Depletion of MAP1S by RNAi causes mitotic abnormalities that consist of failure to form a stable metaphase plate, premature sister chromatid separation, lagging chromosomes, and multipolar spindles.
SIMILARITY: Belongs to the MAP1 family.
SEQUENCE CAUTION: Sequence=AAH07253.1; Type=Erroneous initiation; Sequence=AAH07253.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. At the N-terminus; Sequence=AAH67115.1; Type=Erroneous initiation; Sequence=BAA91743.1; Type=Erroneous initiation; Sequence=BAB14415.1; Type=Erroneous initiation; Sequence=BAB55242.1; Type=Frameshift; Positions=851; Sequence=BAB93493.1; Type=Erroneous initiation; Sequence=CAD38911.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 44.97 RPKM in Testis
Total median expression: 505.93 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -7.1023-0.309 Picture PostScript Text
3' UTR -6.6085-0.078 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026074 - MAP1

SCOP Domains:
56281 - Metallo-hydrolase/oxidoreductase

ModBase Predicted Comparative 3D Structure on Q66K74
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0008017 microtubule binding
GO:0015631 tubulin binding
GO:0042802 identical protein binding
GO:0048487 beta-tubulin binding
GO:0051015 actin filament binding
GO:0004536 deoxyribonuclease activity

Biological Process:
GO:0000226 microtubule cytoskeleton organization
GO:0001578 microtubule bundle formation
GO:0006914 autophagy
GO:0006915 apoptotic process
GO:0007399 nervous system development
GO:0007420 brain development
GO:0010848 regulation of chromatin disassembly
GO:0047497 mitochondrion transport along microtubule
GO:0048812 neuron projection morphogenesis

Cellular Component:
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005819 spindle
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0015630 microtubule cytoskeleton
GO:0030054 cell junction
GO:0030425 dendrite
GO:0042995 cell projection
GO:0043025 neuronal cell body
GO:0045202 synapse
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AK292555 - Homo sapiens cDNA FLJ77630 complete cds, highly similar to Homo sapiens BPY2 interacting protein 1, mRNA.
DQ387861 - Homo sapiens microtubule-associated protein 8 mRNA, complete cds.
BC067115 - Homo sapiens microtubule-associated protein 1S, mRNA (cDNA clone IMAGE:5768192), partial cds.
AL834233 - Homo sapiens mRNA; cDNA DKFZp761H0722 (from clone DKFZp761H0722); complete cds.
BC080547 - Homo sapiens microtubule-associated protein 1S, mRNA (cDNA clone MGC:99525 IMAGE:5925583), complete cds.
BC113952 - Homo sapiens BPY2 interacting protein 1, mRNA (cDNA clone MGC:133087 IMAGE:40027183), complete cds.
AJ440784 - Homo sapiens mRNA for VCY2 interacting protein-1 (VCY2IP-1 gene).
AK027623 - Homo sapiens cDNA FLJ14717 fis, clone NT2RP3001239, moderately similar to MICROTUBULE-ASSOCIATED PROTEIN 1B.
AK308975 - Homo sapiens cDNA, FLJ99016.
AK294936 - Homo sapiens cDNA FLJ55328 complete cds, highly similar to Homo sapiens BPY2 interacting protein 1 (BPY2IP1), mRNA.
BC006358 - Homo sapiens microtubule-associated protein 1S, mRNA (cDNA clone IMAGE:4125792), partial cds.
BC008806 - Homo sapiens microtubule-associated protein 1S, mRNA (cDNA clone IMAGE:3945773), partial cds.
AK023118 - Homo sapiens cDNA FLJ13056 fis, clone NT2RP3001554, weakly similar to MICROTUBULE-ASSOCIATED PROTEIN 1B [CONTAINS: LIGHT CHAIN LC1].
AB062430 - Homo sapiens OK/SW-cl.100 mRNA, complete cds.
AK001531 - Homo sapiens cDNA FLJ10669 fis, clone NT2RP2006275, weakly similar to MICROTUBULE-ASSOCIATED PROTEIN 1B [CONTAINS: LIGHT CHAIN LC1].
BC007253 - Homo sapiens microtubule-associated protein 1S, mRNA (cDNA clone IMAGE:3027801), partial cds.
JD101500 - Sequence 82524 from Patent EP1572962.
JD181116 - Sequence 162140 from Patent EP1572962.
JD334046 - Sequence 315070 from Patent EP1572962.
JD142654 - Sequence 123678 from Patent EP1572962.
JD386481 - Sequence 367505 from Patent EP1572962.
JD519037 - Sequence 500061 from Patent EP1572962.
JD222634 - Sequence 203658 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B4DH53, BPY2IP1, C19orf5, ENST00000324096.1, ENST00000324096.2, ENST00000324096.3, ENST00000324096.4, ENST00000324096.5, ENST00000324096.6, ENST00000324096.7, ENST00000324096.8, MAP1S_HUMAN, MAP8, NM_018174, Q27QB1, Q66K74, Q6NXF1, Q8N3L8, Q8N3W5, Q8NI88, Q96H94, Q96IT4, Q96SP8, Q9BRC6, Q9H928, Q9NVK7, uc317rpb.1, uc317rpb.2, VCY2IP1
UCSC ID: ENST00000324096.9_8
RefSeq Accession: NM_018174.6
Protein: Q66K74 (aka MAP1S_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.