Human Gene MAP2K6 (ENST00000590474.7_5) from GENCODE V47lift37
  Description: mitogen-activated protein kinase kinase 6, transcript variant 1 (from RefSeq NM_002758.4)
Gencode Transcript: ENST00000590474.7_5
Gencode Gene: ENSG00000108984.16_14
Transcript (Including UTRs)
   Position: hg19 chr17:67,410,838-67,550,006 Size: 139,169 Total Exon Count: 12 Strand: +
Coding Region
   Position: hg19 chr17:67,411,126-67,537,894 Size: 126,769 Coding Exon Count: 12 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:67,410,838-67,550,006)mRNA (may differ from genome)Protein (334 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
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-  Comments and Description Text from UniProtKB
  ID: MP2K6_HUMAN
DESCRIPTION: RecName: Full=Dual specificity mitogen-activated protein kinase kinase 6; Short=MAP kinase kinase 6; Short=MAPKK 6; EC=2.7.12.2; AltName: Full=MAPK/ERK kinase 6; Short=MEK 6; AltName: Full=Stress-activated protein kinase kinase 3; Short=SAPK kinase 3; Short=SAPKK-3; Short=SAPKK3;
FUNCTION: Dual specificity protein kinase which acts as an essential component of the MAP kinase signal transduction pathway. With MAP3K3/MKK3, catalyzes the concomitant phosphorylation of a threonine and a tyrosine residue in the MAP kinases p38 MAPK11, MAPK12, MAPK13 and MAPK14 and plays an important role in the regulation of cellular responses to cytokines and all kinds of stresses. Especially, MAP2K3/MKK3 and MAP2K6/MKK6 are both essential for the activation of MAPK11 and MAPK13 induced by environmental stress, whereas MAP2K6/MKK6 is the major MAPK11 activator in response to TNF. MAP2K6/MKK6 also phosphorylates and activates PAK6. The p38 MAP kinase signal transduction pathway leads to direct activation of transcription factors. Nuclear targets of p38 MAP kinase include the transcription factors ATF2 and ELK1. Within the p38 MAPK signal transduction pathway, MAP3K6/MKK6 mediates phosphorylation of STAT4 through MAPK14 activation, and is therefore required for STAT4 activation and STAT4-regulated gene expression in response to IL-12 stimulation. The pathway is also crucial for IL-6-induced SOCS3 expression and down-regulation of IL-6-mediated gene induction; and for IFNG- dependent gene transcription. Has a role in osteoclast differentiation through NF-kappa-B transactivation by TNFSF11, and in endochondral ossification and since SOX9 is another likely downstream target of the p38 MAPK pathway. MAP2K6/MKK6 mediates apoptotic cell death in thymocytes. Acts also as a regulator for melanocytes dendricity, through the modulation of Rho family GTPases.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
ENZYME REGULATION: Activated by dual phosphorylation on Ser-207 and Thr-211 in response to a variety of cellular stresses, including UV radiation, osmotic shock, hypoxia, inflammatory cytokines, interferon gamma (IFNG), and less often by growth factors. MAP2K6/MKK6 is activated by the majority of M3Ks, such as MAP3K5/ASK1, MAP3K1/MEKK1, MAP3K2/MEKK2, MAP3K3/MEKK3, MAP3K4/MEKK4, MAP3K7/TAK1, MAP3K11/MLK3 and MAP3K17/TAOK2.
SUBUNIT: Dimer. Interacts with Yersinia yopJ. Interacts (via its D domain) with its substrates MAPK11, MAPK12, MAPK13 and MAPK14 (By similarity). Interacts (via its DVD domain) with MAP3Ks activators like MAP3K5/ASK1, MAP3K1/MEKK1, MAP3K2/MEKK2, MAP3K3/MEKK3, MAP3K4/MEKK4, MAP3K7/TAK1, MAP3K11/MLK3 and MAP3K17/TAOK2 (By similarity). Interacts with DCTN1.
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Cytoplasm, cytoskeleton. Note=Binds to microtubules.
TISSUE SPECIFICITY: Isoform 2 is only expressed in skeletal muscle. Isoform 1 is expressed in skeletal muscle, heart, and in lesser extent in liver or pancreas.
INDUCTION: Strongly activated by UV, anisomycin, and osmotic shock but not by phorbol esters, NGF or EGF.
DOMAIN: The DVD domain (residues 311-334) contains a conserved docking site and is found in the mammalian MAP kinase kinases (MAP2Ks). The DVD sites bind to their specific upstream MAP kinase kinase kinases (MAP3Ks) and are essential for activation.
DOMAIN: The D domain (residues 4-19) contains a conserved docking site and is required for the binding to MAPK substrates (By similarity).
PTM: Weakly autophosphorylated. Phosphorylated at Ser-207 and Thr- 211 by the majority of M3Ks, such as MAP3K5/ASK1, MAP3K1/MEKK1, MAP3K2/MEKK2, MAP3K3/MEKK3, MAP3K4/MEKK4, MAP3K7/TAK1, MAP3K11/MLK3 and MAP3K17/TAOK2.
PTM: Acetylation of Ser-207 and Thr-211 by Yersinia yopJ prevents phosphorylation and activation, thus blocking the MAPK signaling pathway.
SIMILARITY: Belongs to the protein kinase superfamily. STE Ser/Thr protein kinase family. MAP kinase kinase subfamily.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MAP2K6
Diseases sorted by gene-association score: cerebral cavernous malformations-2 (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.22 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 60.23 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -80.50288-0.280 Picture PostScript Text
3' UTR -3184.4012112-0.263 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
101353 - Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2Y8O - X-ray MuPIT 3ENM - X-ray 3FME - X-ray MuPIT 3VN9 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P52564
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004708 MAP kinase kinase activity
GO:0004713 protein tyrosine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0019901 protein kinase binding
GO:0042802 identical protein binding

Biological Process:
GO:0000165 MAPK cascade
GO:0000187 activation of MAPK activity
GO:0001934 positive regulation of protein phosphorylation
GO:0002931 response to ischemia
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006468 protein phosphorylation
GO:0006915 apoptotic process
GO:0006975 DNA damage induced protein phosphorylation
GO:0007050 cell cycle arrest
GO:0007165 signal transduction
GO:0007346 regulation of mitotic cell cycle
GO:0016310 phosphorylation
GO:0018108 peptidyl-tyrosine phosphorylation
GO:0022602 ovulation cycle process
GO:0023014 signal transduction by protein phosphorylation
GO:0031098 stress-activated protein kinase signaling cascade
GO:0032147 activation of protein kinase activity
GO:0032308 positive regulation of prostaglandin secretion
GO:0042493 response to drug
GO:0042981 regulation of apoptotic process
GO:0043065 positive regulation of apoptotic process
GO:0051770 positive regulation of nitric-oxide synthase biosynthetic process
GO:0060048 cardiac muscle contraction
GO:0070423 nucleotide-binding oligomerization domain containing signaling pathway
GO:0072709 cellular response to sorbitol

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton


-  Descriptions from all associated GenBank mRNAs
  AK290747 - Homo sapiens cDNA FLJ75671 complete cds, highly similar to Homo sapiens mitogen-activated protein kinase kinase 6 (MAP2K6), transcript variant 1, mRNA.
LP895349 - Sequence 213 from Patent EP3253886.
U39656 - Homo sapiens MAP kinase kinase 6 (MKK6) mRNA, complete cds.
LQ878886 - Sequence 1 from Patent WO2018154075.
U39657 - Homo sapiens MAP kinase kinase 6 (MKK6) mRNA, complete cds.
U39065 - Human MAP kinase kinase 6b mRNA, complete cds.
AK225719 - Homo sapiens mRNA for mitogen-activated protein kinase kinase 6 isoform 1 variant, clone: TMS07209.
X96757 - H.sapiens mRNA for MAP kinase kinase.
U49732 - Homo sapiens MAP kinase kinase MEK6 (MEK6) mRNA, complete cds.
BC012009 - Homo sapiens mitogen-activated protein kinase kinase 6, mRNA (cDNA clone MGC:21331 IMAGE:4499772), complete cds.
U39064 - Human MAP kinase kinase 6 mRNA, complete cds.
BX641121 - Homo sapiens mRNA; cDNA DKFZp686N0154 (from clone DKFZp686N0154).
CU680162 - Synthetic construct Homo sapiens gateway clone IMAGE:100018981 5' read MAP2K6 mRNA.
AB384926 - Synthetic construct DNA, clone: pF1KB4307, Homo sapiens MAP2K6 gene for dual specificity mitogen-activated protein kinase kinase 6, complete cds, without stop codon, in Flexi system.
AB451376 - Homo sapiens MAP2K6 mRNA for mitogen-activated protein kinase kinase 6, partial cds, clone: FLJ08063AAAF.
DQ894673 - Synthetic construct Homo sapiens clone IMAGE:100009133; FLH177392.01L; RZPDo839H04123D mitogen-activated protein kinase kinase 6 (MAP2K6) gene, encodes complete protein.
DQ891488 - Synthetic construct clone IMAGE:100004118; FLH177395.01X; RZPDo839H04124D mitogen-activated protein kinase kinase 6 (MAP2K6) gene, encodes complete protein.
KJ891897 - Synthetic construct Homo sapiens clone ccsbBroadEn_01291 MAP2K6 gene, encodes complete protein.
KJ905298 - Synthetic construct Homo sapiens clone ccsbBroadEn_14810 MAP2K6 gene, encodes complete protein.
AB451252 - Homo sapiens MAP2K6 mRNA for mitogen-activated protein kinase kinase 6, complete cds, clone: FLJ08063AAAN.
D87905 - Homo sapiens mRNA for mitogen-activated protein 6, complete cds.
JD200146 - Sequence 181170 from Patent EP1572962.
JD338672 - Sequence 319696 from Patent EP1572962.
JD202519 - Sequence 183543 from Patent EP1572962.
JD092577 - Sequence 73601 from Patent EP1572962.
JD167293 - Sequence 148317 from Patent EP1572962.
JD503671 - Sequence 484695 from Patent EP1572962.
JD251965 - Sequence 232989 from Patent EP1572962.
JD300523 - Sequence 281547 from Patent EP1572962.
JD284770 - Sequence 265794 from Patent EP1572962.
JD175031 - Sequence 156055 from Patent EP1572962.
JD550679 - Sequence 531703 from Patent EP1572962.
JD359786 - Sequence 340810 from Patent EP1572962.
JD255934 - Sequence 236958 from Patent EP1572962.
JD166089 - Sequence 147113 from Patent EP1572962.
JD283198 - Sequence 264222 from Patent EP1572962.
JD268620 - Sequence 249644 from Patent EP1572962.
JD184526 - Sequence 165550 from Patent EP1572962.
JD311265 - Sequence 292289 from Patent EP1572962.
JD267105 - Sequence 248129 from Patent EP1572962.
JD202993 - Sequence 184017 from Patent EP1572962.
JD502347 - Sequence 483371 from Patent EP1572962.
JD510990 - Sequence 492014 from Patent EP1572962.
JD040929 - Sequence 21953 from Patent EP1572962.
JD075025 - Sequence 56049 from Patent EP1572962.
JD453640 - Sequence 434664 from Patent EP1572962.
BC037328 - Homo sapiens cDNA clone IMAGE:5263455.
AK056975 - Homo sapiens cDNA FLJ32413 fis, clone SKMUS2000705.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_hcmvPathway - Human Cytomegalovirus and Map Kinase Pathways
h_p38mapkPathway - p38 MAPK Signaling Pathway
h_keratinocytePathway - Keratinocyte Differentiation
h_nthiPathway - NFkB activation by Nontypeable Hemophilus influenzae
h_tollPathway - Toll-Like Receptor Pathway
h_IL12Pathway - IL12 and Stat4 Dependent Signaling Pathway in Th1 Development
h_fMLPpathway - fMLP induced chemokine gene expression in HMC-1 cells
h_hdacPathway - Control of skeletal myogenesis by HDAC & calcium/calmodulin-dependent kinase (CaMK)
h_il1rPathway - Signal transduction through IL1R
h_stressPathway - TNF/Stress Related Signaling
h_mapkPathway - MAPKinase Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein P52564 (Reactome details) participates in the following event(s):

R-HSA-727819 TAK1 phosphorylates MKK6
R-HSA-450346 activated human TAK1 phosphorylates MKK3/MKK6
R-HSA-3228469 MAP3K5 phosphorylates MKK3 and MKK6
R-HSA-450296 Phosphorylated MKK3/MKK6 migrates to nucleus
R-HSA-1247960 Activation of p38 MAPK
R-HSA-8877691 MAP2K6 phosphorylates PIP4K2B
R-HSA-450333 Activated human MKK3/MKK6 phosphorylates p38 MAPK complexed with MAPKAPK2 or MAPKAPK3
R-HSA-3238999 Activated human MKK3/MKK6 phosphorylates p38 MAPK complexed with MAPKAPK5
R-HSA-168638 NOD1/2 Signaling Pathway
R-HSA-9020702 Interleukin-1 signaling
R-HSA-450302 activated TAK1 mediates p38 MAPK activation
R-HSA-2559580 Oxidative Stress Induced Senescence
R-HSA-168643 Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways
R-HSA-446652 Interleukin-1 family signaling
R-HSA-375170 CDO in myogenesis
R-HSA-6811555 PI5P Regulates TP53 Acetylation
R-HSA-450294 MAP kinase activation
R-HSA-2559583 Cellular Senescence
R-HSA-168249 Innate Immune System
R-HSA-449147 Signaling by Interleukins
R-HSA-525793 Myogenesis
R-HSA-6804758 Regulation of TP53 Activity through Acetylation
R-HSA-166058 MyD88:Mal cascade initiated on plasma membrane
R-HSA-168164 Toll Like Receptor 3 (TLR3) Cascade
R-HSA-448424 Interleukin-17 signaling
R-HSA-937061 TRIF(TICAM1)-mediated TLR4 signaling
R-HSA-975138 TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation
R-HSA-975871 MyD88 cascade initiated on plasma membrane
R-HSA-2262752 Cellular responses to stress
R-HSA-168256 Immune System
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-1266738 Developmental Biology
R-HSA-5633007 Regulation of TP53 Activity
R-HSA-166016 Toll Like Receptor 4 (TLR4) Cascade
R-HSA-168179 Toll Like Receptor TLR1:TLR2 Cascade
R-HSA-168188 Toll Like Receptor TLR6:TLR2 Cascade
R-HSA-168898 Toll-Like Receptors Cascades
R-HSA-166166 MyD88-independent TLR4 cascade
R-HSA-975155 MyD88 dependent cascade initiated on endosome
R-HSA-168142 Toll Like Receptor 10 (TLR10) Cascade
R-HSA-168176 Toll Like Receptor 5 (TLR5) Cascade
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-181438 Toll Like Receptor 2 (TLR2) Cascade
R-HSA-168138 Toll Like Receptor 9 (TLR9) Cascade
R-HSA-168181 Toll Like Receptor 7/8 (TLR7/8) Cascade
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)
R-HSA-5211405 Anthrax LF cleaves target cell MAP2K6 (MEK6)
R-HSA-5210891 Uptake and function of anthrax toxins
R-HSA-5339562 Uptake and actions of bacterial toxins
R-HSA-5663205 Infectious disease
R-HSA-1643685 Disease

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000590474.1, ENST00000590474.2, ENST00000590474.3, ENST00000590474.4, ENST00000590474.5, ENST00000590474.6, MEK6, MKK6, MP2K6_HUMAN, NM_002758, P52564, PRKMK6, SKK3, uc326vdi.1, uc326vdi.2
UCSC ID: ENST00000590474.7_5
RefSeq Accession: NM_002758.4
Protein: P52564 (aka MP2K6_HUMAN or MPK6_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.