Human Gene MAP3K4 (ENST00000392142.9_7) from GENCODE V47lift37
  Description: mitogen-activated protein kinase kinase kinase 4, transcript variant 1 (from RefSeq NM_005922.4)
Gencode Transcript: ENST00000392142.9_7
Gencode Gene: ENSG00000085511.20_13
Transcript (Including UTRs)
   Position: hg19 chr6:161,412,801-161,538,412 Size: 125,612 Total Exon Count: 27 Strand: +
Coding Region
   Position: hg19 chr6:161,412,964-161,537,902 Size: 124,939 Coding Exon Count: 27 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:161,412,801-161,538,412)mRNA (may differ from genome)Protein (1608 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: M3K4_HUMAN
DESCRIPTION: RecName: Full=Mitogen-activated protein kinase kinase kinase 4; EC=2.7.11.25; AltName: Full=MAP three kinase 1; AltName: Full=MAPK/ERK kinase kinase 4; Short=MEK kinase 4; Short=MEKK 4;
FUNCTION: Component of a protein kinase signal transduction cascade. Activates the CSBP2, P38 and JNK MAPK pathways, but not the ERK pathway. Specifically phosphorylates and activates MAP2K4 and MAP2K6.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium.
ENZYME REGULATION: N-terminal autoinhibitory domain interacts with the C-terminal kinase domain, inhibiting kinase activity, and preventing interaction with its substrate, MAP2K6. The GADD45 proteins activate the kinase by binding to the N-terminal domain. Activated by phosphorylation on Thr-1505.
SUBUNIT: Monomer and homodimer. Homodimerization enhances kinase activity. Interacts with TRAF4; this promotes homodimerization (By similarity). Binds both upstream activators and downstream substrates in multimolecular complexes. Interacts with AXIN1 and DIXDC1; interaction with DIXDC1 prevents interaction with AXIN1.
SUBCELLULAR LOCATION: Cytoplasm, perinuclear region (By similarity). Note=Localized in perinuclear vesicular-like structures, probably Golgi-associated vesicles (By similarity).
TISSUE SPECIFICITY: Expressed at high levels in heart, placenta, skeletal muscle and pancreas, and at lower levels in other tissues.
SIMILARITY: Belongs to the protein kinase superfamily. STE Ser/Thr protein kinase family. MAP kinase kinase kinase subfamily.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=BAA13204.2; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAC12766.2; Type=Erroneous gene model prediction; Sequence=CAH70639.1; Type=Erroneous gene model prediction; Sequence=CAH70640.1; Type=Erroneous gene model prediction; Sequence=CAI20815.1; Type=Erroneous gene model prediction; Sequence=CAI20816.1; Type=Erroneous gene model prediction; Sequence=CAI21477.1; Type=Erroneous gene model prediction; Sequence=CAI41309.1; Type=Erroneous gene model prediction; Sequence=CAI41310.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 12.45 RPKM in Uterus
Total median expression: 365.69 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -90.40163-0.555 Picture PostScript Text
3' UTR -133.60510-0.262 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF14531 - Kinase-like
PF19431 - MEKK4 N-terminal

SCOP Domains:
101447 - Formin homology 2 domain (FH2 domain)
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on Q9Y6R4
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004709 MAP kinase kinase kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding

Biological Process:
GO:0000165 MAPK cascade
GO:0000186 activation of MAPKK activity
GO:0001890 placenta development
GO:0006468 protein phosphorylation
GO:0007346 regulation of mitotic cell cycle
GO:0010225 response to UV-C
GO:0010468 regulation of gene expression
GO:0016310 phosphorylation
GO:0019100 male germ-line sex determination
GO:0032212 positive regulation of telomere maintenance via telomerase
GO:0035556 intracellular signal transduction
GO:0042981 regulation of apoptotic process
GO:0043507 positive regulation of JUN kinase activity
GO:0051973 positive regulation of telomerase activity
GO:0060718 chorionic trophoblast cell differentiation
GO:1900745 positive regulation of p38MAPK cascade
GO:1904355 positive regulation of telomere capping

Cellular Component:
GO:0005737 cytoplasm
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  D86968 - Homo sapiens mRNA for KIAA0213 gene.
BC146770 - Homo sapiens mitogen-activated protein kinase kinase kinase 4, mRNA (cDNA clone MGC:166846 IMAGE:9007216), complete cds.
AF002715 - Homo sapiens MAP kinase kinase kinase (MTK1) mRNA, complete cds.
BC143735 - Homo sapiens mitogen-activated protein kinase kinase kinase 4, mRNA (cDNA clone MGC:177266 IMAGE:9052249), complete cds.
BC136276 - Homo sapiens mitogen-activated protein kinase kinase kinase 4, mRNA (cDNA clone MGC:167886 IMAGE:9020263), complete cds.
BC143743 - Homo sapiens cDNA clone IMAGE:9052257.
BC143750 - Homo sapiens cDNA clone IMAGE:9052264.
AK307866 - Homo sapiens cDNA, FLJ97814.
JD423233 - Sequence 404257 from Patent EP1572962.
JD479651 - Sequence 460675 from Patent EP1572962.
JD271279 - Sequence 252303 from Patent EP1572962.
JD458430 - Sequence 439454 from Patent EP1572962.
JD056223 - Sequence 37247 from Patent EP1572962.
JD128940 - Sequence 109964 from Patent EP1572962.
JD056226 - Sequence 37250 from Patent EP1572962.
JD458471 - Sequence 439495 from Patent EP1572962.
AF116604 - Homo sapiens PRO0412 mRNA, complete cds.
AK124430 - Homo sapiens cDNA FLJ42439 fis, clone BLADE2007935, highly similar to MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 4 (EC 2.7.1.-).
JD534290 - Sequence 515314 from Patent EP1572962.
JD088223 - Sequence 69247 from Patent EP1572962.
JD272310 - Sequence 253334 from Patent EP1572962.
JD137162 - Sequence 118186 from Patent EP1572962.
JD488804 - Sequence 469828 from Patent EP1572962.
JD048169 - Sequence 29193 from Patent EP1572962.
JD534930 - Sequence 515954 from Patent EP1572962.
JD403637 - Sequence 384661 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_mapkPathway - MAPKinase Signaling Pathway

-  Other Names for This Gene
  Alternate Gene Symbols: A6H8W0, B7ZLD3, B9EG75, ENST00000392142.1, ENST00000392142.2, ENST00000392142.3, ENST00000392142.4, ENST00000392142.5, ENST00000392142.6, ENST00000392142.7, ENST00000392142.8, KIAA0213, M3K4_HUMAN, MAPKKK4, MEKK4, MTK1, NM_005922, Q5VTT8, Q5VTT9, Q92612, Q9H408, Q9Y6R4, uc318uwh.1, uc318uwh.2
UCSC ID: ENST00000392142.9_7
RefSeq Accession: NM_005922.4
Protein: Q9Y6R4 (aka M3K4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.