Human Gene MAPK13 (ENST00000211287.9_4) from GENCODE V47lift37
  Description: mitogen-activated protein kinase 13, transcript variant 1 (from RefSeq NM_002754.5)
Gencode Transcript: ENST00000211287.9_4
Gencode Gene: ENSG00000156711.17_7
Transcript (Including UTRs)
   Position: hg19 chr6:36,098,290-36,112,298 Size: 14,009 Total Exon Count: 12 Strand: +
Coding Region
   Position: hg19 chr6:36,098,360-36,107,150 Size: 8,791 Coding Exon Count: 12 

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RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:36,098,290-36,112,298)mRNA (may differ from genome)Protein (365 aa)
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-  Comments and Description Text from UniProtKB
  ID: MK13_HUMAN
DESCRIPTION: RecName: Full=Mitogen-activated protein kinase 13; Short=MAP kinase 13; Short=MAPK 13; EC=2.7.11.24; AltName: Full=Mitogen-activated protein kinase p38 delta; Short=MAP kinase p38 delta; AltName: Full=Stress-activated protein kinase 4;
FUNCTION: Serine/threonine kinase which acts as an essential component of the MAP kinase signal transduction pathway. MAPK13 is one of the four p38 MAPKs which play an important role in the cascades of cellular responses evoked by extracellular stimuli such as proinflammatory cytokines or physical stress leading to direct activation of transcription factors such as ELK1 and ATF2. Accordingly, p38 MAPKs phosphorylate a broad range of proteins and it has been estimated that they may have approximately 200 to 300 substrates each. MAPK13 is one of the less studied p38 MAPK isoforms. Some of the targets are downstream kinases such as MAPKAPK2, which are activated through phosphorylation and further phosphorylate additional targets. Plays a role in the regulation of protein translation by phosphorylating and inactivating EEF2K. Involved in cytoskeletal remodeling through phosphorylation of MAPT and STMN1. Mediates UV irradiation induced up-regulation of the gene expression of CXCL14. Plays an important role in the regulation of epidermal keratinocyte differentiation, apoptosis and skin tumor development. Phosphorylates the transcriptional activator MYB in response to stress which leads to rapid MYB degradation via a proteasome-dependent pathway. MAPK13 also phosphorylates and down-regulates PRKD1 during regulation of insulin secretion in pancreatic beta cells.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium.
ENZYME REGULATION: Activated by phosphorylation on threonine and tyrosine by dual specificity kinases, MAP2K3/MKK3, MAP2K6/MKK6, MAP2K4/MKK4 and MAP2K7/MKK7. Activation by ultraviolet radiation, hyperosmotic shock, anisomycin or by TNF-alpha is mediated by MAP2K3/MKK3. Inhibited by dual specificity phosphatase DUSP1.
SUBUNIT: Interacts with MAPK8IP2.
INTERACTION: P21462:FPR1; NbExp=3; IntAct=EBI-2116951, EBI-2869495; Q15139:PRKD1; NbExp=6; IntAct=EBI-2116951, EBI-1181072;
TISSUE SPECIFICITY: Expressed in testes, pancreas, small intestine, lung and kidney. Abundant in macrophages, also present in neutrophils, CD4+ T-cells, and endothelial cells.
DOMAIN: The TXY motif contains the threonine and tyrosine residues whose phosphorylation activates the MAP kinases.
PTM: Dually phosphorylated on Thr-180 and Tyr-182 by MAP2K3/MKK3, MAP2K4/MKK4, MAP2K6/MKK6 and MAP2K7/MKK7, which activates the enzyme. Dephosphorylated by dual specificity phosphatase DUSP1.
SIMILARITY: Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. MAP kinase subfamily.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 45.01 RPKM in Esophagus - Mucosa
Total median expression: 497.37 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -32.8070-0.469 Picture PostScript Text
3' UTR -2027.005148-0.394 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR003527 - MAP_kinase_CS
IPR008352 - MAPK_p38
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom

Pfam Domains:
PF00069 - Protein kinase domain
PF03109 - ABC1 atypical kinase-like domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3COI - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O15264
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004707 MAP kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0000165 MAPK cascade
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006468 protein phosphorylation
GO:0006970 response to osmotic stress
GO:0007049 cell cycle
GO:0010468 regulation of gene expression
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0032755 positive regulation of interleukin-6 production
GO:0034644 cellular response to UV
GO:0050729 positive regulation of inflammatory response
GO:0051403 stress-activated MAPK cascade
GO:0070301 cellular response to hydrogen peroxide
GO:0071347 cellular response to interleukin-1
GO:0072709 cellular response to sorbitol
GO:0072740 cellular response to anisomycin
GO:1903936 cellular response to sodium arsenite

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AB209586 - Homo sapiens mRNA for mitogen-activated protein kinase 13 variant protein.
AK308018 - Homo sapiens cDNA, FLJ97966.
JD484890 - Sequence 465914 from Patent EP1572962.
BC085196 - Homo sapiens mitogen-activated protein kinase 13, mRNA (cDNA clone MGC:99536 IMAGE:6107307), complete cds.
JD409885 - Sequence 390909 from Patent EP1572962.
JD460520 - Sequence 441544 from Patent EP1572962.
AF004709 - Homo sapiens stress-activated protein kinase 4 mRNA, complete cds.
BC000433 - Homo sapiens mitogen-activated protein kinase 13, mRNA (cDNA clone MGC:8364 IMAGE:2819932), complete cds.
BC001641 - Homo sapiens mitogen-activated protein kinase 13, mRNA (cDNA clone MGC:2042 IMAGE:2819932), complete cds.
BC004428 - Homo sapiens mitogen-activated protein kinase 13, mRNA (cDNA clone MGC:3830 IMAGE:2819932), complete cds.
Y10488 - H.sapiens mRNA for stress activated protein kinase-4.
AF015256 - Homo sapiens p38 mitogen-activated protein kinase (p38 delta) mRNA, complete cds.
AF092535 - Homo sapiens mitogen-activated protein kinase p38delta (PRKM13) mRNA, complete cds.
JD220230 - Sequence 201254 from Patent EP1572962.
U93232 - Human MAP kinase p38delta mRNA, complete cds.
AF100546 - Homo sapiens stress-activated protein kinase 4 (SAPK4) mRNA, complete cds.
EU832250 - Synthetic construct Homo sapiens clone HAIB:100067279; DKFZo004F1126 mitogen-activated protein kinase 13 protein (MAPK13) gene, encodes complete protein.
EU832156 - Synthetic construct Homo sapiens clone HAIB:100067185; DKFZo008F1125 mitogen-activated protein kinase 13 protein (MAPK13) gene, encodes complete protein.
AB451344 - Homo sapiens MAPK13 mRNA for mitogen-activated protein kinase 13, partial cds, clone: FLJ08003AAAF.
AB463892 - Synthetic construct DNA, clone: pF1KB6529, Homo sapiens MAPK13 gene for mitogen-activated protein kinase 13, without stop codon, in Flexi system.
CR541687 - Homo sapiens full open reading frame cDNA clone RZPDo834C0828D for gene MAPK13, mitogen-activated protein kinase 13; complete cds, without stopcodon.
KU178281 - Homo sapiens mitogen-activated protein kinase 13 isoform 1 (MAPK13) mRNA, partial cds.
KU178282 - Homo sapiens mitogen-activated protein kinase 13 isoform 2 (MAPK13) mRNA, partial cds, alternatively spliced.
DQ894551 - Synthetic construct Homo sapiens clone IMAGE:100009011; FLH176308.01L; RZPDo839B11121D mitogen-activated protein kinase 13 (MAPK13) gene, encodes complete protein.
AB451221 - Homo sapiens MAPK13 mRNA for mitogen-activated protein kinase 13, complete cds, clone: FLJ08003AAAN.
KJ891895 - Synthetic construct Homo sapiens clone ccsbBroadEn_01289 MAPK13 gene, encodes complete protein.
KJ905295 - Synthetic construct Homo sapiens clone ccsbBroadEn_14806 MAPK13 gene, encodes complete protein.
BT007221 - Homo sapiens mitogen-activated protein kinase 13 mRNA, complete cds.
CR536490 - Homo sapiens full open reading frame cDNA clone RZPDo834C0420D for gene MAPK13, mitogen-activated protein kinase 13; complete cds, incl. stopcodon.
DQ891372 - Synthetic construct clone IMAGE:100004002; FLH176312.01X; RZPDo839B11122D mitogen-activated protein kinase 13 (MAPK13) gene, encodes complete protein.
AK222922 - Homo sapiens mRNA for MAPK13 protein (Fragment) variant, clone: HRC08145.
JD461641 - Sequence 442665 from Patent EP1572962.
JD379357 - Sequence 360381 from Patent EP1572962.
JD307938 - Sequence 288962 from Patent EP1572962.
JD106259 - Sequence 87283 from Patent EP1572962.
JD369200 - Sequence 350224 from Patent EP1572962.
DQ571788 - Homo sapiens piRNA piR-31900, complete sequence.
JD073170 - Sequence 54194 from Patent EP1572962.
DQ588728 - Homo sapiens piRNA piR-55840, complete sequence.
DQ587207 - Homo sapiens piRNA piR-54319, complete sequence.
JD204234 - Sequence 185258 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_stathminPathway - Stathmin and breast cancer resistance to antimicrotubule agents
h_keratinocytePathway - Keratinocyte Differentiation
h_mapkPathway - MAPKinase Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein O15264 (Reactome details) participates in the following event(s):

R-HSA-1247960 Activation of p38 MAPK
R-HSA-168638 NOD1/2 Signaling Pathway
R-HSA-171007 p38MAPK events
R-HSA-376172 DSCAM interactions
R-HSA-4420097 VEGFA-VEGFR2 Pathway
R-HSA-168643 Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways
R-HSA-167044 Signalling to RAS
R-HSA-373752 Netrin-1 signaling
R-HSA-194138 Signaling by VEGF
R-HSA-168249 Innate Immune System
R-HSA-187687 Signalling to ERKs
R-HSA-422475 Axon guidance
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-168256 Immune System
R-HSA-187037 Signaling by NTRK1 (TRKA)
R-HSA-1266738 Developmental Biology
R-HSA-162582 Signal Transduction
R-HSA-166520 Signaling by NTRKs

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000211287.1, ENST00000211287.2, ENST00000211287.3, ENST00000211287.4, ENST00000211287.5, ENST00000211287.6, ENST00000211287.7, ENST00000211287.8, MK13_HUMAN, NM_002754, O14739, O15124, O15264, PRKM13, Q5U4A5, Q6FI46, Q9UNU0, SAPK4, uc317cle.1, uc317cle.2
UCSC ID: ENST00000211287.9_4
RefSeq Accession: NM_002754.5
Protein: O15264 (aka MK13_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.