Human Gene MAPK6 (ENST00000261845.7_4) from GENCODE V47lift37
  Description: mitogen-activated protein kinase 6 (from RefSeq NM_002748.4)
Gencode Transcript: ENST00000261845.7_4
Gencode Gene: ENSG00000069956.14_10
Transcript (Including UTRs)
   Position: hg19 chr15:52,311,416-52,359,572 Size: 48,157 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr15:52,338,658-52,357,197 Size: 18,540 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:52,311,416-52,359,572)mRNA (may differ from genome)Protein (721 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MK06_HUMAN
DESCRIPTION: RecName: Full=Mitogen-activated protein kinase 6; Short=MAP kinase 6; Short=MAPK 6; EC=2.7.11.24; AltName: Full=Extracellular signal-regulated kinase 3; Short=ERK-3; AltName: Full=MAP kinase isoform p97; Short=p97-MAPK;
FUNCTION: Atypical MAPK protein. Phosphorylates microtubule- associated protein 2 (MAP2) and MAPKAPK5. The precise role of the complex formed with MAPKAPK5 is still unclear, but the complex follows a complex set of phosphorylation events: upon interaction with atypical MAPKAPK5, ERK3/MAPK6 is phosphorylated at Ser-189 and then mediates phosphorylation and activation of MAPKAPK5, which in turn phosphorylates ERK3/MAPK6. May promote entry in the cell cycle (By similarity).
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium (By similarity).
ENZYME REGULATION: Activated by phosphorylation at Ser-189.
SUBUNIT: Heterodimer with ERK4/MAPK4. Interacts with (via FRIEDE motif) MAPKAPK5 (By similarity). Interacts with UBE3A; this interaction may be indirect and mediated by HERC2, possibly via HERC2 interaction with NEURL4.
INTERACTION: P12504:vif (xeno); NbExp=2; IntAct=EBI-1384105, EBI-779991;
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Nucleus (By similarity). Note=Translocates to the cytoplasm following interaction with MAPKAPK5 (By similarity).
TISSUE SPECIFICITY: Highest expression in the skeletal muscle, followed by the brain. Also found in heart, placenta, lung, liver, pancreas, kidney and skin fibroblasts.
DOMAIN: In contrast to classical MAPKs, the TXY motif within the activation loop is replaced by the SEG motif, whose phosphorylation activates the MAP kinases (By similarity).
PTM: Phosphorylated at Ser-189 by PAK1, PAK2 and PAK3 resulting in catalytic activation. Phosphorylated by MAPKAPK5 at other sites.
SIMILARITY: Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. MAP kinase subfamily.
SIMILARITY: Contains 1 protein kinase domain.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/MAPK6ID43349ch15q21.html";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MAPK6
Diseases sorted by gene-association score: pulmonary immaturity (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 30.03 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 452.74 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -233.40789-0.296 Picture PostScript Text
3' UTR -517.602375-0.218 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR008350 - MAPK_ERK3/4
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2I6L - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q16659
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004707 MAP kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0019901 protein kinase binding
GO:0046982 protein heterodimerization activity

Biological Process:
GO:0000165 MAPK cascade
GO:0006468 protein phosphorylation
GO:0007049 cell cycle
GO:0007165 signal transduction
GO:0010468 regulation of gene expression
GO:0016310 phosphorylation
GO:0060999 positive regulation of dendritic spine development
GO:0071310 cellular response to organic substance

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0032156 septin cytoskeleton
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  CR749401 - Homo sapiens mRNA; cDNA DKFZp686F03189 (from clone DKFZp686F03189).
L77964 - Homo sapiens ERK3 protein kinase mRNA, complete cds.
BC035492 - Homo sapiens mitogen-activated protein kinase 6, mRNA (cDNA clone MGC:5156 IMAGE:2984834), complete cds.
JD157953 - Sequence 138977 from Patent EP1572962.
JD267348 - Sequence 248372 from Patent EP1572962.
AF420474 - Homo sapiens ERK-3 mRNA, complete cds.
X80692 - H.sapiens ERK3 mRNA.
JD320051 - Sequence 301075 from Patent EP1572962.
JD048233 - Sequence 29257 from Patent EP1572962.
JD261674 - Sequence 242698 from Patent EP1572962.
AK313633 - Homo sapiens cDNA, FLJ94204, highly similar to Homo sapiens mitogen-activated protein kinase 6 (MAPK6), mRNA.
JD298805 - Sequence 279829 from Patent EP1572962.
JD416936 - Sequence 397960 from Patent EP1572962.
JD270023 - Sequence 251047 from Patent EP1572962.
JD385512 - Sequence 366536 from Patent EP1572962.
JD166209 - Sequence 147233 from Patent EP1572962.
AB384720 - Synthetic construct DNA, clone: pF1KB3011, Homo sapiens MAPK6 gene for mitogen-activated protein kinase 6, complete cds, without stop codon, in Flexi system.
DQ894810 - Synthetic construct Homo sapiens clone IMAGE:100009270; FLH178677.01L; RZPDo839F11127D mitogen-activated protein kinase 6 (MAPK6) gene, encodes complete protein.
DQ891618 - Synthetic construct clone IMAGE:100004248; FLH178681.01X; RZPDo839F11128D mitogen-activated protein kinase 6 (MAPK6) gene, encodes complete protein.
AB451301 - Homo sapiens MAPK6 mRNA for mitogen-activated protein kinase 6, complete cds, clone: FLJ08157AAAN.
KJ897381 - Synthetic construct Homo sapiens clone ccsbBroadEn_06775 MAPK6 gene, encodes complete protein.
KJ905292 - Synthetic construct Homo sapiens clone ccsbBroadEn_14802 MAPK6 gene, encodes complete protein.
DM367325 - COMPOSITIONS AND METHODS FOR THE DIAGNOSIS AND ALLEVIATION OF TUMOR.
JD109966 - Sequence 90990 from Patent EP1572962.
JD512977 - Sequence 494001 from Patent EP1572962.
AJ251709 - Homo sapiens partial mRNA for putative protein kinase ERK3.
JD454305 - Sequence 435329 from Patent EP1572962.
JD299244 - Sequence 280268 from Patent EP1572962.
JD546899 - Sequence 527923 from Patent EP1572962.
JD250667 - Sequence 231691 from Patent EP1572962.
JD358855 - Sequence 339879 from Patent EP1572962.
JD096686 - Sequence 77710 from Patent EP1572962.
JD290283 - Sequence 271307 from Patent EP1572962.
JD346026 - Sequence 327050 from Patent EP1572962.
JD346025 - Sequence 327049 from Patent EP1572962.
JD282748 - Sequence 263772 from Patent EP1572962.
JD488954 - Sequence 469978 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_mapkPathway - MAPKinase Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein Q16659 (Reactome details) participates in the following event(s):

R-HSA-5687081 MAPK6 is ubiquitinated at the N-terminal
R-HSA-5692770 SEPT7 binds p-S189 MAPK6 and p-T182 MAPKAPK5
R-HSA-5692781 p-S189 MAPK6:p-T182 MAPKAPK5 bind KALRN
R-HSA-5692749 CDC14A,B bind MAPK6
R-HSA-5692755 CDK1 phosphorylates MAPK6
R-HSA-5692764 MAPK6 binds CCND3
R-HSA-5687086 PAK1,2,3 phosphorylates MAPK6,4
R-HSA-5687091 p-S MAPK6,4 binds MAPKAPK5
R-HSA-5687090 p-S MAPK6 phosphorylates NCOA3
R-HSA-5692768 MAPKAPK5 phosphorylates KALRN
R-HSA-5692754 CDC14A,B dephosphorylate p-3S,T MAPK6
R-HSA-5687094 p-S MAPK6,4 phosphorylate MAPKAPK5
R-HSA-5692775 SEPT7:p-S189 MAPK6:p-T182 MAPKAPK5 phosphorylates CDC42EPs
R-HSA-5687128 MAPK6/MAPK4 signaling
R-HSA-5683057 MAPK family signaling cascades
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: B2R945, B5BU65, ENST00000261845.1, ENST00000261845.2, ENST00000261845.3, ENST00000261845.4, ENST00000261845.5, ENST00000261845.6, ERK3, MK06_HUMAN, NM_002748, PRKM6, Q16659, Q68DH4, Q8IYN8, uc317guj.1, uc317guj.2
UCSC ID: ENST00000261845.7_4
RefSeq Accession: NM_002748.4
Protein: Q16659 (aka MK06_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.