Human Gene MAPK9 (ENST00000452135.7_13) from GENCODE V47lift37
  Description: mitogen-activated protein kinase 9, transcript variant JNK2-a2 (from RefSeq NM_002752.5)
Gencode Transcript: ENST00000452135.7_13
Gencode Gene: ENSG00000050748.18_18
Transcript (Including UTRs)
   Position: hg19 chr5:179,660,143-179,719,083 Size: 58,941 Total Exon Count: 12 Strand: -
Coding Region
   Position: hg19 chr5:179,663,384-179,707,561 Size: 44,178 Coding Exon Count: 11 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:179,660,143-179,719,083)mRNA (may differ from genome)Protein (424 aa)
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-  Comments and Description Text from UniProtKB
  ID: MK09_HUMAN
DESCRIPTION: RecName: Full=Mitogen-activated protein kinase 9; Short=MAP kinase 9; Short=MAPK 9; EC=2.7.11.24; AltName: Full=JNK-55; AltName: Full=Stress-activated protein kinase 1a; Short=SAPK1a; AltName: Full=Stress-activated protein kinase JNK2; AltName: Full=c-Jun N-terminal kinase 2;
FUNCTION: Serine/threonine-protein kinase involved in various processes such as cell proliferation, differentiation, migration, transformation and programmed cell death. Extracellular stimuli such as proinflammatory cytokines or physical stress stimulate the stress-activated protein kinase/c-Jun N-terminal kinase (SAP/JNK) signaling pathway. In this cascade, two dual specificity kinases MAP2K4/MKK4 and MAP2K7/MKK7 phosphorylate and activate MAPK9/JNK2. In turn, MAPK9/JNK2 phosphorylates a number of transcription factors, primarily components of AP-1 such as JUN and ATF2 and thus regulates AP-1 transcriptional activity. In response to oxidative or ribotoxic stresses, inhibits rRNA synthesis by phosphorylating and inactivating the RNA polymerase 1-specific transcription initiation factor RRN3. Promotes stressed cell apoptosis by phosphorylating key regulatory factors including TP53 and YAP1. In T-cells, MAPK8 and MAPK9 are required for polarized differentiation of T-helper cells into Th1 cells. Upon T-cell receptor (TCR) stimulation, is activated by CARMA1, BCL10, MAP2K7 and MAP3K7/TAK1 to regulate JUN protein levels. Plays an important role in the osmotic stress-induced epithelial tight-junctions disruption. When activated, promotes beta-catenin/CTNNB1 degradation and inhibits the canonical Wnt signaling pathway. Participates also in neurite growth in spiral ganglion neurons.
FUNCTION: MAPK9 isoforms display different binding patterns: alpha-1 and alpha-2 preferentially bind to JUN, whereas beta-1 and beta-2 bind to ATF2. However, there is no correlation between binding and phosphorylation, which is achieved at about the same efficiency by all isoforms. JUNB is not a substrate for JNK2 alpha-2, and JUND binds only weakly to it.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium.
ENZYME REGULATION: Activated by threonine and tyrosine phosphorylation by either of two dual specificity kinases, MAP2K4 and MAP2K7. MAP2K4 shows a strong preference for Tyr-185 while MAP2K7 phosphorylates Tyr-183 preferentially. Inhibited by dual specificity phosphatases, such as DUSP1.
SUBUNIT: Interacts with MECOM and DCLK2 (By similarity). Binds to at least four scaffolding proteins, MAPK8IP1/JIP-1, MAPK8IP2/JIP- 2, MAPK8IP3/JIP-3/JSAP1 and SPAG9/MAPK8IP4/JIP-4. These proteins also bind other components of the JNK signaling pathway. Interacts with NFATC4. Interacts with ATF7; the interaction does not phosphorylate ATF7 but acts as a docking site for ATF7-associated partners such as JUN. Interacts with BCL10. Interacts with CTNNB1 and GSK3B.
INTERACTION: P40763:STAT3; NbExp=3; IntAct=EBI-713586, EBI-518675;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus.
DOMAIN: The TXY motif contains the threonine and tyrosine residues whose phosphorylation activates the MAP kinases.
PTM: Dually phosphorylated on Thr-183 and Tyr-185 by MAP2K7 and MAP2K4, which activates the enzyme. Autophosphorylated in vitro.
SIMILARITY: Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. MAP kinase subfamily.
SIMILARITY: Contains 1 protein kinase domain.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/JNK2ID426.html";
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/mapk9/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MAPK9
Diseases sorted by gene-association score: breast cancer (2), colorectal cancer (1), pharynx cancer (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 37.25 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 465.60 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -163.30283-0.577 Picture PostScript Text
3' UTR -884.903241-0.273 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR003527 - MAP_kinase_CS
IPR008351 - MAPK_JNK
IPR000719 - Prot_kinase_cat_dom
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF03109 - ABC1 atypical kinase-like domain
PF06293 - Lipopolysaccharide kinase (Kdo/WaaP) family
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3E7O - X-ray MuPIT 3NPC - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P45984
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004705 JUN kinase activity
GO:0004707 MAP kinase activity
GO:0004712 protein serine/threonine/tyrosine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008134 transcription factor binding
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0006468 protein phosphorylation
GO:0007254 JNK cascade
GO:0007258 JUN phosphorylation
GO:0009612 response to mechanical stimulus
GO:0010628 positive regulation of gene expression
GO:0010744 positive regulation of macrophage derived foam cell differentiation
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0031398 positive regulation of protein ubiquitination
GO:0034614 cellular response to reactive oxygen species
GO:0038095 Fc-epsilon receptor signaling pathway
GO:0042752 regulation of circadian rhythm
GO:0043065 positive regulation of apoptotic process
GO:0046686 response to cadmium ion
GO:0048511 rhythmic process
GO:0048666 neuron development
GO:0071276 cellular response to cadmium ion
GO:0071310 cellular response to organic substance
GO:0071803 positive regulation of podosome assembly
GO:1901485 positive regulation of transcription factor catabolic process
GO:2001235 positive regulation of apoptotic signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005829 cytosol
GO:0043005 neuron projection


-  Descriptions from all associated GenBank mRNAs
  BC032539 - Homo sapiens mitogen-activated protein kinase 9, mRNA (cDNA clone MGC:45322 IMAGE:5528624), complete cds.
L31951 - Human protein kinase (JNK2) mRNA, complete cds.
U09759 - Human protein kinase (JNK2) mRNA, complete cds.
U35003 - Human JNK2 beta2 protein kinase (JNK2B2) mRNA, complete cds.
AK289638 - Homo sapiens cDNA FLJ77002 complete cds, highly similar to Homo sapiens mitogen-activated protein kinase 9 (MAPK9), transcript variant 4, mRNA.
U35002 - Human JNK2 beta1 protein kinase (JNK2B1) mRNA, complete cds.
U34821 - Human JNK2 alpha1 protein kinase (JNK2A1) mRNA, complete cds.
CR536580 - Homo sapiens full open reading frame cDNA clone RZPDo834B1022D for gene MAPK9, mitogen-activated protein kinase 9; complete cds, incl. stopcodon.
KJ891894 - Synthetic construct Homo sapiens clone ccsbBroadEn_01288 MAPK9 gene, encodes complete protein.
KJ905293 - Synthetic construct Homo sapiens clone ccsbBroadEn_14804 MAPK9 gene, encodes complete protein.
AB451302 - Homo sapiens MAPK9 mRNA for mitogen-activated protein kinase 9 isoform JNK2 alpha2, complete cds, clone: FLJ08158AAAN.
DQ893713 - Synthetic construct Homo sapiens clone IMAGE:100008173; FLH167024.01L; RZPDo839G0487D mitogen-activated protein kinase 9 (MAPK9) gene, encodes complete protein.
EU176194 - Synthetic construct Homo sapiens clone IMAGE:100006351; FLH167029.01X; RZPDo839A04250D mitogen-activated protein kinase 9 (MAPK9) gene, encodes complete protein.
AB451355 - Homo sapiens MAPK9 mRNA for mitogen-activated protein kinase 9 isoform JNK2 alpha2, partial cds, clone: FLJ08024AAAF.
AB451433 - Homo sapiens MAPK9 mRNA for mitogen-activated protein kinase 9 isoform JNK2 alpha2, partial cds, clone: FLJ08158AAAF.
AB384837 - Synthetic construct DNA, clone: pF1KB3690, Homo sapiens MAPK9 gene for mitogen-activated protein kinase 9, complete cds, without stop codon, in Flexi system.
HM036707 - Homo sapiens mitogen-activated protein kinase 9 isoform JNK2 alpha 3 (MAPK9) mRNA, complete cds, alternatively spliced.
HM036708 - Homo sapiens mitogen-activated protein kinase 9 isoform JNK2 beta 3 (MAPK9) mRNA, complete cds, alternatively spliced.
HM036709 - Homo sapiens mitogen-activated protein kinase 9 isoform JNK2 alpha 4 (MAPK9) mRNA, complete cds, alternatively spliced.
EU927388 - Homo sapiens mitogen-activated protein kinase 9 isoform JNK2 gamma (MAPK9) mRNA, complete cds, alternatively spliced.
HM036706 - Homo sapiens mitogen-activated protein kinase 9 isoform JNK2 gamma 2 (MAPK9) mRNA, complete cds, alternatively spliced.
CU689412 - Synthetic construct Homo sapiens gateway clone IMAGE:100019335 5' read MAPK9 mRNA.
JD111212 - Sequence 92236 from Patent EP1572962.
DM110830 - Novel Cancer Marker and Use Thereof.
JD201677 - Sequence 182701 from Patent EP1572962.
JD273681 - Sequence 254705 from Patent EP1572962.
JD305931 - Sequence 286955 from Patent EP1572962.
JD322493 - Sequence 303517 from Patent EP1572962.
JD147224 - Sequence 128248 from Patent EP1572962.
JD161066 - Sequence 142090 from Patent EP1572962.
JD170470 - Sequence 151494 from Patent EP1572962.
JD421026 - Sequence 402050 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_mapkPathway - MAPKinase Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein P45984 (Reactome details) participates in the following event(s):

R-HSA-450348 Activated human JNKs migrate to nucleoplasm
R-HSA-168162 Phosphorylation of human JNKs by activated MKK4/MKK7
R-HSA-168136 Activated JNKs phosphorylate c-JUN
R-HSA-168053 Phosphorylated MAPKs phosphorylate ATF-2
R-HSA-450321 JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1
R-HSA-2559580 Oxidative Stress Induced Senescence
R-HSA-2871796 FCERI mediated MAPK activation
R-HSA-450294 MAP kinase activation
R-HSA-2559583 Cellular Senescence
R-HSA-2454202 Fc epsilon receptor (FCERI) signaling
R-HSA-450341 Activation of the AP-1 family of transcription factors
R-HSA-166058 MyD88:Mal cascade initiated on plasma membrane
R-HSA-168164 Toll Like Receptor 3 (TLR3) Cascade
R-HSA-448424 Interleukin-17 signaling
R-HSA-937061 TRIF(TICAM1)-mediated TLR4 signaling
R-HSA-975138 TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation
R-HSA-975871 MyD88 cascade initiated on plasma membrane
R-HSA-2262752 Cellular responses to stress
R-HSA-168249 Innate Immune System
R-HSA-450282 MAPK targets/ Nuclear events mediated by MAP kinases
R-HSA-166016 Toll Like Receptor 4 (TLR4) Cascade
R-HSA-168179 Toll Like Receptor TLR1:TLR2 Cascade
R-HSA-168188 Toll Like Receptor TLR6:TLR2 Cascade
R-HSA-168898 Toll-Like Receptors Cascades
R-HSA-449147 Signaling by Interleukins
R-HSA-166166 MyD88-independent TLR4 cascade
R-HSA-975155 MyD88 dependent cascade initiated on endosome
R-HSA-168142 Toll Like Receptor 10 (TLR10) Cascade
R-HSA-168176 Toll Like Receptor 5 (TLR5) Cascade
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-168256 Immune System
R-HSA-181438 Toll Like Receptor 2 (TLR2) Cascade
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168138 Toll Like Receptor 9 (TLR9) Cascade
R-HSA-168181 Toll Like Receptor 7/8 (TLR7/8) Cascade

-  Other Names for This Gene
  Alternate Gene Symbols: A8K0S3, B5BU66, B5M0B4, D3DWQ8, D3DWQ9, ENST00000452135.1, ENST00000452135.2, ENST00000452135.3, ENST00000452135.4, ENST00000452135.5, ENST00000452135.6, JNK2, MK09_HUMAN, NM_002752, P45984, PRKM9, Q15708, Q15710, Q15711, Q8N5C5, SAPK1A, uc320tll.1, uc320tll.2
UCSC ID: ENST00000452135.7_13
RefSeq Accession: NM_002752.5
Protein: P45984 (aka MK09_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.