Human Gene MARK1 (ENST00000366917.6_8) from GENCODE V47lift37
  Description: microtubule affinity regulating kinase 1, transcript variant 2 (from RefSeq NM_018650.5)
Gencode Transcript: ENST00000366917.6_8
Gencode Gene: ENSG00000116141.17_11
Transcript (Including UTRs)
   Position: hg19 chr1:220,701,478-220,837,803 Size: 136,326 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg19 chr1:220,702,165-220,835,508 Size: 133,344 Coding Exon Count: 18 

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RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:220,701,478-220,837,803)mRNA (may differ from genome)Protein (795 aa)
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-  Comments and Description Text from UniProtKB
  ID: MARK1_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase MARK1; EC=2.7.11.1; EC=2.7.11.26; AltName: Full=MAP/microtubule affinity-regulating kinase 1; AltName: Full=PAR1 homolog c; Short=Par-1c; Short=Par1c;
FUNCTION: Serine/threonine-protein kinase involved in cell polarity and microtubule dynamics regulation. Phosphorylates DCX, MAP2, MAP4 and MAPT/TAU. Involved in cell polarity by phosphorylating the microtubule-associated proteins MAP2, MAP4 and MAPT/TAU at KXGS motifs, causing detachment from microtubules, and their disassembly. Involved in the regulation of neuronal migration through its dual activities in regulating cellular polarity and microtubule dynamics, possibly by phosphorylating and regulating DCX. Also acts as a positive regulator of the Wnt signaling pathway, probably by mediating phosphorylation of dishevelled proteins (DVL1, DVL2 and/or DVL3).
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
CATALYTIC ACTIVITY: ATP + [tau protein] = ADP + [tau protein] phosphate.
COFACTOR: Magnesium (By similarity).
ENZYME REGULATION: Inhibited by phosphorylation at Ser-219 (By similarity). Activated by phosphorylation on Thr-215.
SUBCELLULAR LOCATION: Cell membrane; Peripheral membrane protein. Cytoplasm, cytoskeleton (By similarity). Note=Appears to localize to an intracellular network (By similarity).
TISSUE SPECIFICITY: Highly expressed in heart, skeletal muscle, brain, fetal brain and fetal kidney.
DOMAIN: The UBA domain does not seem to bind ubiquitin and ubiquitin-like and might play a role in regulating the enzyme conformation and localization. Activation of the kinase activity following phosphorylation at Thr-208 is accompanied by a conformational change that alters the orientation of the UBA domain with respect to the catalytic domain (By similarity).
DOMAIN: The KA1 domain mediates binding to phospholipids and targeting to membranes. Binds phosphatidic acid (PA), phosphatidylserine (PtdSer) and phosphatidylinositol 4,5- bisphosphate (PtdIns(4,5)P2).
PTM: Phosphorylation at Thr-613 by PRKCZ/aPKC in polarized epithelial cells inhibits the kinase activity (By similarity). Phosphorylated at Thr-215 by STK11/LKB1 in complex with STE20- related adapter-alpha (STRADA) pseudo kinase and CAB39. Phosphorylation at Thr-215 by TAOK1 activates the kinase activity, leading to phosphorylation and detachment of MAPT/TAU from microtubules. Phosphorylation at Ser-219 by GSK3-beta (GSK3B) inhibits the kinase activity.
DISEASE: Note=Genetic variations in MARK1 may be associated with susceptibility to autism. MARK1 is overexpressed in the prefrontal cortex of patients with autism and causes changes in the function of cortical dendrites.
MISCELLANEOUS: Phosphorylation of MAPT/tau by MARK1 could play a role in early steps of Alzheimer disease. Pathological aggregation of MAPT/tau to neurofibrillary tangles, filamentous structures consisting of paired helical filaments (PHFs), is one of the hallmarks of Alzheimer disease. Hyperphosphorylation by MARK1 could be the initial step for this abnormal aggregation of tau in Alzheimer disease and animal models of tauopathy (PubMed:11089574).
SIMILARITY: Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.
SIMILARITY: Contains 1 KA1 (kinase-associated) domain.
SIMILARITY: Contains 1 protein kinase domain.
SIMILARITY: Contains 1 UBA domain.
SEQUENCE CAUTION: Sequence=BAA96001.1; Type=Erroneous initiation; Sequence=BAB55152.1; Type=Frameshift; Positions=763;

-  Primer design for this transcript
 

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-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.44 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 173.36 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -364.80687-0.531 Picture PostScript Text
3' UTR -494.602295-0.216 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001772 - Kinase-assoc_KA1
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS
IPR015940 - UBA/transl_elong_EF1B_N_euk

Pfam Domains:
PF00069 - Protein kinase domain
PF00627 - UBA/TS-N domain
PF02149 - Kinase associated domain 1
PF07714 - Protein tyrosine and serine/threonine kinase
PF14531 - Kinase-like

SCOP Domains:
46934 - UBA-like
103243 - KA1-like
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2HAK - X-ray MuPIT 3OSE - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9P0L2
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0001786 phosphatidylserine binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005524 ATP binding
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding
GO:0008289 lipid binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding
GO:0050321 tau-protein kinase activity
GO:0070300 phosphatidic acid binding

Biological Process:
GO:0000226 microtubule cytoskeleton organization
GO:0001764 neuron migration
GO:0006468 protein phosphorylation
GO:0007010 cytoskeleton organization
GO:0016055 Wnt signaling pathway
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0035556 intracellular signal transduction

Cellular Component:
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0015630 microtubule cytoskeleton
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  BC068608 - Homo sapiens MAP/microtubule affinity-regulating kinase 1, mRNA (cDNA clone IMAGE:5296989), with apparent retained intron.
AB040910 - Homo sapiens KIAA1477 mRNA for KIAA1477 protein.
AK098103 - Homo sapiens cDNA FLJ40784 fis, clone TRACH2006331, moderately similar to Homo sapiens MARK (MARK) mRNA.
AK314614 - Homo sapiens cDNA, FLJ95455.
AF154845 - Homo sapiens MARK (MARK) mRNA, complete cds.
BC113869 - Homo sapiens MAP/microtubule affinity-regulating kinase 1, mRNA (cDNA clone MGC:126513 IMAGE:40036731), complete cds.
BC114478 - Homo sapiens MAP/microtubule affinity-regulating kinase 1, mRNA (cDNA clone MGC:126512 IMAGE:40036730), complete cds.
AK295506 - Homo sapiens cDNA FLJ58728 complete cds, highly similar to Serine/threonine-protein kinase MARK1 (EC 2.7.11.1).
AB385474 - Synthetic construct DNA, clone: pF1KA1477, Homo sapiens MARK1 gene for serine/threonine-protein kinase MARK1, complete cds, without stop codon, in Flexi system.
KJ534879 - Homo sapiens clone MARK1_iso-B_adult-A01 MAP/microtubule affinity-regulating kinase 1 isoform B (MARK1) mRNA, partial cds, alternatively spliced.
KJ534880 - Homo sapiens clone MARK1_iso-D_fetal-F03 MAP/microtubule affinity-regulating kinase 1 isoform D (MARK1) mRNA, partial cds, alternatively spliced.
KJ534881 - Homo sapiens clone MARK1_iso-C_fetal-F04 MAP/microtubule affinity-regulating kinase 1 isoform C (MARK1) mRNA, partial cds, alternatively spliced.
KJ535089 - Homo sapiens clone MARK1_iso-A_adult-A11 MAP/microtubule affinity-regulating kinase 1 isoform A (MARK1) mRNA, complete cds, alternatively spliced.
JD462736 - Sequence 443760 from Patent EP1572962.
AK027493 - Homo sapiens cDNA FLJ14587 fis, clone NT2RM4001758, moderately similar to PUTATIVE SERINE/THREONINE-PROTEIN KINASE EMK (EC 2.7.1.-).
AL512724 - Homo sapiens mRNA; cDNA DKFZp547M202 (from clone DKFZp547M202).
JD566797 - Sequence 547821 from Patent EP1572962.
JD486215 - Sequence 467239 from Patent EP1572962.
JD410982 - Sequence 392006 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: D3DTB0, D3DTB1, ENST00000366917.1, ENST00000366917.2, ENST00000366917.3, ENST00000366917.4, ENST00000366917.5, KIAA1477 , MARK , MARK1 , MARK1_HUMAN, NM_018650, Q2HIY1, Q5VTF9, Q5VTG0, Q96SW9, Q9P0L2, Q9P251, uc318flt.1, uc318flt.2
UCSC ID: ENST00000366917.6_8
RefSeq Accession: NM_018650.5
Protein: Q9P0L2 (aka MARK1_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
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