Human Gene MASP2 (ENST00000400897.8_8) from GENCODE V47lift37
  Description: MBL associated serine protease 2, transcript variant 1 (from RefSeq NM_006610.4)
Gencode Transcript: ENST00000400897.8_8
Gencode Gene: ENSG00000009724.18_10
Transcript (Including UTRs)
   Position: hg19 chr1:11,086,580-11,107,296 Size: 20,717 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg19 chr1:11,086,942-11,107,264 Size: 20,323 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:11,086,580-11,107,296)mRNA (may differ from genome)Protein (686 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MASP2_HUMAN
DESCRIPTION: RecName: Full=Mannan-binding lectin serine protease 2; EC=3.4.21.104; AltName: Full=MBL-associated serine protease 2; AltName: Full=Mannose-binding protein-associated serine protease 2; Short=MASP-2; Contains: RecName: Full=Mannan-binding lectin serine protease 2 A chain; Contains: RecName: Full=Mannan-binding lectin serine protease 2 B chain; Flags: Precursor;
FUNCTION: Serum protease that plays an important role in the activation of the complement system via mannose-binding lectin. After activation by auto-catalytic cleavage it cleaves C2 and C4, leading to their activation and to the formation of C3 convertase.
CATALYTIC ACTIVITY: Selective cleavage after Arg-223 in complement component C2 (-Ser-Leu-Gly-Arg-|-Lys-Ile-Gln-Ile) and after Arg-76 in complement component C4 (-Gly-Leu-Gln-Arg-|-Ala-Leu-Glu-Ile).
SUBUNIT: Homodimer; disulfide-linked. Binds MBL2. Isoform 2 binds to MASP1. Binds SERPING1. Dimerization and MBL2 binding requires calcium ions.
SUBCELLULAR LOCATION: Secreted.
TISSUE SPECIFICITY: Plasma.
PTM: The iron and 2-oxoglutarate dependent 3-hydroxylation of aspartate and asparagine is (R) stereospecific within EGF domains (By similarity).
PTM: Activated by cleavage after Arg-444. The uncleaved zymogen is inactive towards synthetic substrates, but has sufficient activity to effect autocatalytic cleavage.
DISEASE: Defects in MASP2 are the cause of MASP2 deficiency (MASPD) [MIM:613791]. MASPD is a disorder that results in autoimmune manifestations, recurrent severe infections, and chronic inflammatory disease.
SIMILARITY: Belongs to the peptidase S1 family.
SIMILARITY: Contains 2 CUB domains.
SIMILARITY: Contains 1 EGF-like domain.
SIMILARITY: Contains 1 peptidase S1 domain.
SIMILARITY: Contains 2 Sushi (CCP/SCR) domains.
WEB RESOURCE: Name=MASP2base; Note=MASP2 mutation db; URL="http://bioinf.uta.fi/MASP2base/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MASP2
Diseases sorted by gene-association score: masp2 deficiency* (1278), rheumatic fever (12), c1 inhibitor deficiency (12), c1s deficiency (10), hereditary angioedema (8), rheumatic heart disease (7), progressive relapsing multiple sclerosis (7), 3mc syndrome (6)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 68.92 RPKM in Liver
Total median expression: 158.33 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -8.0032-0.250 Picture PostScript Text
3' UTR -93.00362-0.257 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016060 - Complement_control_module
IPR000859 - CUB
IPR001881 - EGF-like_Ca-bd
IPR013032 - EGF-like_CS
IPR000152 - EGF-type_Asp/Asn_hydroxyl_site
IPR018097 - EGF_Ca-bd_CS
IPR009003 - Pept_cys/ser_Trypsin-like
IPR024175 - Pept_S1A_C1r/C1S/mannan-bd
IPR018114 - Peptidase_S1/S6_AS
IPR001254 - Peptidase_S1_S6
IPR001314 - Peptidase_S1A
IPR000436 - Sushi_SCR_CCP

Pfam Domains:
PF00084 - Sushi repeat (SCR repeat)
PF00089 - Trypsin
PF00431 - CUB domain
PF07645 - Calcium-binding EGF domain

SCOP Domains:
49854 - Spermadhesin, CUB domain
50494 - Trypsin-like serine proteases
57535 - Complement control module/SCR domain
57196 - EGF/Laminin
57184 - Growth factor receptor domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1Q3X - X-ray MuPIT 1SZB - X-ray MuPIT 1ZJK - X-ray MuPIT 3TVJ - X-ray MuPIT 4FXG - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O00187
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001855 complement component C4b binding
GO:0004252 serine-type endopeptidase activity
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0008233 peptidase activity
GO:0008236 serine-type peptidase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
GO:0048306 calcium-dependent protein binding

Biological Process:
GO:0001867 complement activation, lectin pathway
GO:0002376 immune system process
GO:0006508 proteolysis
GO:0006956 complement activation
GO:0006958 complement activation, classical pathway
GO:0045087 innate immune response

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  JD154552 - Sequence 135576 from Patent EP1572962.
Y09926 - Homo sapiens mRNA for MASP-2 protein.
X98400 - H.sapiens mRNA for mannan-binding lectin-associated serine protease-2.
JD490652 - Sequence 471676 from Patent EP1572962.
JD381855 - Sequence 362879 from Patent EP1572962.
JD093995 - Sequence 75019 from Patent EP1572962.
JD424268 - Sequence 405292 from Patent EP1572962.
AK290823 - Homo sapiens cDNA FLJ77090 complete cds, highly similar to Homo sapiens mannan-binding lectin serine peptidase 2 (MASP2), transcript variant 1, mRNA.
BC156886 - Synthetic construct Homo sapiens clone IMAGE:100062765, MGC:190607 mannan-binding lectin serine peptidase 2 (MASP2) mRNA, encodes complete protein.
BC156086 - Synthetic construct Homo sapiens clone IMAGE:100062346, MGC:190474 mannan-binding lectin serine peptidase 2 (MASP2) mRNA, encodes complete protein.
Y18282 - Homo sapiens mRNA for mannose binding lectin-associated serine protease-2, alternatively spliced transcript (clone phl-7).
Y18283 - Homo sapiens mRNA for mannose binding lectin-associated serine protease-2, alternatively spliced transcript (clone phl-6).
BC052299 - Homo sapiens cDNA clone IMAGE:6285857, partial cds.
BC067359 - Homo sapiens mannan-binding lectin serine peptidase 2, mRNA (cDNA clone IMAGE:6299026), with apparent retained intron.
BC080556 - Homo sapiens cDNA clone IMAGE:6269223.
Y18281 - Homo sapiens mRNA for mannose binding lectin-associated serine protease-2, alternatively spliced transcript (clone phl-5).
Y18284 - Homo sapiens mRNA for mannose binding lectin-associated serine protease-2, incompletely spliced primary transcript, clone phl-8.
AB008047 - Homo sapiens sMAP mRNA for small MBL-associated protein, complete cds.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_compPathway - Complement Pathway
h_lectinPathway - Lectin Induced Complement Pathway

Reactome (by CSHL, EBI, and GO)

Protein O00187 (Reactome details) participates in the following event(s):

R-HSA-166721 MBL binds to repetitive carbohydrate structures on the surfaces of viruses, bacteria, fungi, and protozoa
R-HSA-2855054 Ficolin-2 binds to molecular patterns on the target cell surface
R-HSA-2855125 Ficolin-1 binds to molecular patterns on the target cell surface
R-HSA-2855077 Ficolin-3 binds to molecular patterns on the target cell surface
R-HSA-8852509 CL-LK binds carbohydrates on target cell surface
R-HSA-166726 Activation of MASPs
R-HSA-166753 Conversion of C4 into C4a and C4b
R-HSA-166792 Conversion of C2 into C2a and C2b
R-HSA-166662 Lectin pathway of complement activation
R-HSA-2855086 Ficolins bind to repetitive carbohydrate structures on the target cell surface
R-HSA-166786 Creation of C4 and C2 activators
R-HSA-166663 Initial triggering of complement
R-HSA-166658 Complement cascade
R-HSA-168249 Innate Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A8K458, A8MWJ2, ENST00000400897.1, ENST00000400897.2, ENST00000400897.3, ENST00000400897.4, ENST00000400897.5, ENST00000400897.6, ENST00000400897.7, MASP2_HUMAN, NM_006610, O00187, O75754, Q5TEQ5, Q5TER0, Q96QG4, Q9BZH0, Q9H498, Q9H499, Q9UBP3, Q9UC48, Q9ULC7, Q9UMV3, Q9Y270, uc319bbe.1, uc319bbe.2
UCSC ID: ENST00000400897.8_8
RefSeq Accession: NM_006610.4
Protein: O00187 (aka MASP2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.