Human Gene MCOLN1 (ENST00000264079.11_4) from GENCODE V47lift37
  Description: mucolipin TRP cation channel 1 (from RefSeq NM_020533.3)
Gencode Transcript: ENST00000264079.11_4
Gencode Gene: ENSG00000090674.16_8
Transcript (Including UTRs)
   Position: hg19 chr19:7,587,510-7,598,895 Size: 11,386 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg19 chr19:7,587,637-7,598,681 Size: 11,045 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:7,587,510-7,598,895)mRNA (may differ from genome)Protein (580 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MCLN1_HUMAN
DESCRIPTION: RecName: Full=Mucolipin-1; AltName: Full=MG-2; AltName: Full=Mucolipidin;
FUNCTION: Cation channel probably playing a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. Could play a major role in Ca(2+) transport regulating lysosomal exocytosis.
ENZYME REGULATION: Channel function is transiently modulated by changes in Ca(2+), and inhibited by a reduction of pH; pH changes modify the aggregation state of unitary channels.
SUBUNIT: Forms multimeric complexes.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein. Late endosome membrane; Multi-pass membrane protein. Lysosome membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Widely expressed in adult and fetal tissues.
DISEASE: Defects in MCOLN1 are the cause of mucolipidosis type IV (MLIV) [MIM:252650]; also known as sialolipidosis. MLIV is an autosomal recessive lysosomal storage disorder characterized by severe psychomotor retardation and ophthalmologic abnormalities, including corneal opacity, retinal degeneration and strabismus. Storage bodies of lipids and water-soluble substances are seen by electron microscopy in almost every cell type of the patients. Most patients are unable to speak or walk independently and reach a maximal developmental level of 1-2 years. All patients have constitutive achlorhydia associated with a secondary elevation of serum gastrin levels. MLIV may be due to a defect in sorting and/or transport along the late endocytic pathway. MLIV is found at relatively high frequency among Ashkenazi Jews.
SIMILARITY: Belongs to the transient receptor (TC 1.A.4) family. Polycystin subfamily. MCOLN1 sub-subfamily.
SEQUENCE CAUTION: Sequence=AAQ13604.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=CAC07813.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact; Sequence=EAW69031.1; Type=Erroneous gene model prediction; Sequence=EAW69034.1; Type=Erroneous gene model prediction;
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/MCOLN1";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MCOLN1
Diseases sorted by gene-association score: mucolipidosis iv* (1690), yunis-varon syndrome (8), strabismus (7), sphingolipidosis (6), cerebral palsy, ataxic, autosomal recessive (6), lysosomal storage disease (4), lipid storage disease (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 55.69 RPKM in Spleen
Total median expression: 679.44 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -56.20127-0.443 Picture PostScript Text
3' UTR -74.30214-0.347 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013122 - PKD1_2_channel

Pfam Domains:
PF08016 - Polycystin cation channel

ModBase Predicted Comparative 3D Structure on Q9GZU1
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005261 cation channel activity
GO:0005262 calcium channel activity
GO:0005381 iron ion transmembrane transporter activity
GO:0005515 protein binding
GO:0008289 lipid binding
GO:0072345 NAADP-sensitive calcium-release channel activity
GO:0097682 intracellular phosphatidylinositol-3,5-bisphosphate-sensitive cation channel activity
GO:0099604 ligand-gated calcium channel activity

Biological Process:
GO:0002250 adaptive immune response
GO:0002376 immune system process
GO:0006811 ion transport
GO:0006812 cation transport
GO:0006816 calcium ion transport
GO:0019722 calcium-mediated signaling
GO:0033572 transferrin transport
GO:0034755 iron ion transmembrane transport
GO:0051209 release of sequestered calcium ion into cytosol
GO:0051289 protein homotetramerization
GO:0070588 calcium ion transmembrane transport
GO:0071277 cellular response to calcium ion
GO:0071467 cellular response to pH
GO:0097352 autophagosome maturation
GO:0098655 cation transmembrane transport

Cellular Component:
GO:0001891 phagocytic cup
GO:0005764 lysosome
GO:0005765 lysosomal membrane
GO:0005768 endosome
GO:0005770 late endosome
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0010008 endosome membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030659 cytoplasmic vesicle membrane
GO:0030670 phagocytic vesicle membrane
GO:0031410 cytoplasmic vesicle
GO:0031902 late endosome membrane
GO:0042995 cell projection
GO:0043235 receptor complex


-  Descriptions from all associated GenBank mRNAs
  JD331939 - Sequence 312963 from Patent EP1572962.
AK294330 - Homo sapiens cDNA FLJ54613 complete cds, highly similar to Mucolipin-1.
AF287269 - Homo sapiens mucolipin (MCOLN1) mRNA, complete cds.
BC005149 - Homo sapiens mucolipin 1, mRNA (cDNA clone MGC:3287 IMAGE:3507836), complete cds.
AK222673 - Homo sapiens mRNA for mucolipin 1 variant, clone: CBR01552.
AK310109 - Homo sapiens cDNA, FLJ17151.
AK026102 - Homo sapiens cDNA: FLJ22449 fis, clone HRC09609.
AF249319 - Homo sapiens mucolipidosis type IV protein (MLIV) mRNA, complete cds.
AJ293659 - Homo sapiens mRNA for mucolipidin, short form (ML4 gene).
AJ293970 - Homo sapiens mRNA for mucolipidin (ML4 gene).
JD226601 - Sequence 207625 from Patent EP1572962.
DQ891844 - Synthetic construct clone IMAGE:100004474; FLH180530.01X; RZPDo839D03134D mucolipin 1 (MCOLN1) gene, encodes complete protein.
DQ895032 - Synthetic construct Homo sapiens clone IMAGE:100009492; FLH180526.01L; RZPDo839D03133D mucolipin 1 (MCOLN1) gene, encodes complete protein.
KJ894412 - Synthetic construct Homo sapiens clone ccsbBroadEn_03806 MCOLN1 gene, encodes complete protein.
KR709814 - Synthetic construct Homo sapiens clone CCSBHm_00006405 MCOLN1 (MCOLN1) mRNA, encodes complete protein.
KR709815 - Synthetic construct Homo sapiens clone CCSBHm_00006407 MCOLN1 (MCOLN1) mRNA, encodes complete protein.
KR709816 - Synthetic construct Homo sapiens clone CCSBHm_00006410 MCOLN1 (MCOLN1) mRNA, encodes complete protein.
CU675019 - Synthetic construct Homo sapiens gateway clone IMAGE:100017717 5' read MCOLN1 mRNA.
AF171088 - Homo sapiens MSTP080 (MST080) mRNA, complete cds.
JD225577 - Sequence 206601 from Patent EP1572962.
JD284731 - Sequence 265755 from Patent EP1572962.
JD547722 - Sequence 528746 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9GZU1 (Reactome details) participates in the following event(s):

R-HSA-917936 MCOLN1 transports Fe2+ from endosome lumen to cytosol
R-HSA-3295579 TRPs transport extracellular Ca2+ to cytosol
R-HSA-917977 Transferrin endocytosis and recycling
R-HSA-917937 Iron uptake and transport
R-HSA-3295583 TRP channels
R-HSA-382551 Transport of small molecules
R-HSA-2672351 Stimuli-sensing channels
R-HSA-983712 Ion channel transport

-  Other Names for This Gene
  Alternate Gene Symbols: D6W647, ENST00000264079.1, ENST00000264079.10, ENST00000264079.2, ENST00000264079.3, ENST00000264079.4, ENST00000264079.5, ENST00000264079.6, ENST00000264079.7, ENST00000264079.8, ENST00000264079.9, MCLN1_HUMAN, MCOLN1 , ML4, MSTP080, NM_020533, Q7Z4F7, Q9GZU1, Q9H292, Q9H4B3, Q9H4B5, TRPML1 , uc317hpa.1, uc317hpa.2
UCSC ID: ENST00000264079.11_4
RefSeq Accession: NM_020533.3
Protein: Q9GZU1 (aka MCLN1_HUMAN or MLN1_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene MCOLN1:
ml4 (Mucolipidosis IV)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.