Human Gene MED14 (ENST00000324817.6_7) from GENCODE V47lift37
  Description: mediator complex subunit 14 (from RefSeq NM_004229.4)
Gencode Transcript: ENST00000324817.6_7
Gencode Gene: ENSG00000180182.11_9
Transcript (Including UTRs)
   Position: hg19 chrX:40,507,557-40,594,794 Size: 87,238 Total Exon Count: 31 Strand: -
Coding Region
   Position: hg19 chrX:40,511,058-40,594,664 Size: 83,607 Coding Exon Count: 31 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:40,507,557-40,594,794)mRNA (may differ from genome)Protein (1454 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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-  Comments and Description Text from UniProtKB
  ID: MED14_HUMAN
DESCRIPTION: RecName: Full=Mediator of RNA polymerase II transcription subunit 14; AltName: Full=Activator-recruited cofactor 150 kDa component; Short=ARC150; AltName: Full=Cofactor required for Sp1 transcriptional activation subunit 2; Short=CRSP complex subunit 2; AltName: Full=Mediator complex subunit 14; AltName: Full=RGR1 homolog; Short=hRGR1; AltName: Full=Thyroid hormone receptor-associated protein complex 170 kDa component; Short=Trap170; AltName: Full=Transcriptional coactivator CRSP150; AltName: Full=Vitamin D3 receptor-interacting protein complex 150 kDa component; Short=DRIP150;
FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
SUBUNIT: Interacts with GATA1 (By similarity). Component of the Mediator complex, which is composed of MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The MED12, MED13, CCNC and CDK8 subunits form a distinct module termed the CDK8 module. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Interacts with AR, ESR1, SREBF1 and STAT2.
INTERACTION: P00519:ABL1; NbExp=1; IntAct=EBI-394489, EBI-375543; P06241:FYN; NbExp=1; IntAct=EBI-394489, EBI-515315; P62993:GRB2; NbExp=1; IntAct=EBI-394489, EBI-401755; P16333:NCK1; NbExp=1; IntAct=EBI-394489, EBI-389883;
SUBCELLULAR LOCATION: Nucleus (Probable).
TISSUE SPECIFICITY: Ubiquitous.
SIMILARITY: Belongs to the Mediator complex subunit 14 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.01 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 255.09 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -60.50130-0.465 Picture PostScript Text
3' UTR -833.403501-0.238 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013947 - Mediator_Med14

Pfam Domains:
PF08638 - Mediator complex subunit MED14

ModBase Predicted Comparative 3D Structure on O60244
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001104 RNA polymerase II transcription cofactor activity
GO:0003712 transcription cofactor activity
GO:0003713 transcription coactivator activity
GO:0005515 protein binding
GO:0030374 ligand-dependent nuclear receptor transcription coactivator activity
GO:0038023 signaling receptor activity
GO:0042809 vitamin D receptor binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006367 transcription initiation from RNA polymerase II promoter
GO:0019827 stem cell population maintenance
GO:0030518 intracellular steroid hormone receptor signaling pathway
GO:0030521 androgen receptor signaling pathway
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0016020 membrane
GO:0016592 mediator complex
GO:0070847 core mediator complex


-  Descriptions from all associated GenBank mRNAs
  AB006651 - Homo sapiens EXLM1 mRNA, complete cds.
AF304448 - Homo sapiens vitamin D receptor-interacting protein complex component DRIP150 (DRIP150) mRNA, complete cds.
JD310712 - Sequence 291736 from Patent EP1572962.
JD442400 - Sequence 423424 from Patent EP1572962.
JD081090 - Sequence 62114 from Patent EP1572962.
JD368488 - Sequence 349512 from Patent EP1572962.
JD149049 - Sequence 130073 from Patent EP1572962.
JD290682 - Sequence 271706 from Patent EP1572962.
JD089249 - Sequence 70273 from Patent EP1572962.
JD450694 - Sequence 431718 from Patent EP1572962.
JD063322 - Sequence 44346 from Patent EP1572962.
JD440851 - Sequence 421875 from Patent EP1572962.
JD435881 - Sequence 416905 from Patent EP1572962.
JD250732 - Sequence 231756 from Patent EP1572962.
JD258135 - Sequence 239159 from Patent EP1572962.
JD274152 - Sequence 255176 from Patent EP1572962.
BC132672 - Homo sapiens mediator complex subunit 14, mRNA (cDNA clone MGC:164303 IMAGE:40146694), complete cds.
BC132674 - Homo sapiens mediator complex subunit 14, mRNA (cDNA clone MGC:164305 IMAGE:40146696), complete cds.
BC144231 - Homo sapiens cDNA clone IMAGE:9052751, containing frame-shift errors.
JD237937 - Sequence 218961 from Patent EP1572962.
JD558047 - Sequence 539071 from Patent EP1572962.
JD403905 - Sequence 384929 from Patent EP1572962.
JD430010 - Sequence 411034 from Patent EP1572962.
JD310452 - Sequence 291476 from Patent EP1572962.
JD246049 - Sequence 227073 from Patent EP1572962.
JD488476 - Sequence 469500 from Patent EP1572962.
JD291169 - Sequence 272193 from Patent EP1572962.
JD501246 - Sequence 482270 from Patent EP1572962.
JD250447 - Sequence 231471 from Patent EP1572962.
JD243712 - Sequence 224736 from Patent EP1572962.
JD258657 - Sequence 239681 from Patent EP1572962.
JD359958 - Sequence 340982 from Patent EP1572962.
AK023368 - Homo sapiens cDNA FLJ13306 fis, clone OVARC1001417, highly similar to Homo sapiens thyroid hormone receptor-associated protein complex component TRAP170 mRNA.
AF135802 - Homo sapiens thyroid hormone receptor-associated protein complex component TRAP170 mRNA, complete cds.
AF070563 - Homo sapiens clone 24555 mRNA sequence.
BC098377 - Homo sapiens mediator complex subunit 14, mRNA (cDNA clone MGC:104513 IMAGE:30527948), complete cds.
AK293070 - Homo sapiens cDNA FLJ77399 complete cds, highly similar to Homo sapiens cofactor required for Sp1 transcriptional activation, subunit 2, 150kDa (CRSP2), mRNA.
JD350632 - Sequence 331656 from Patent EP1572962.
JD166729 - Sequence 147753 from Patent EP1572962.
AF104256 - Homo sapiens transcriptional co-activator CRSP150 (CRSP150) mRNA, complete cds.
AB590907 - Synthetic construct DNA, clone: pFN21AB9455, Homo sapiens MED14 gene for mediator complex subunit 14, without stop codon, in Flexi system.
AJ012077 - Homo sapiens mRNA for EXLM1 protein, 3' end.
AK308871 - Homo sapiens cDNA, FLJ98912.
HG518165 - Homo sapiens partial mRNA for mediator complex subunit 14 (MED14 gene).

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O60244 (Reactome details) participates in the following event(s):

R-HSA-212352 Formation of ARC coactivator complex
R-HSA-212380 Formation of TRAP coactivator complex
R-HSA-212432 Formation of DRIP coactivator complex
R-HSA-381309 PPARG:RXRA heterodimer binds to fatty acid-like ligands
R-HSA-212436 Generic Transcription Pathway
R-HSA-381340 Transcriptional regulation of white adipocyte differentiation
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-1266738 Developmental Biology
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: ARC150, CRSP2, CXorf4, DRIP150, ENST00000324817.1, ENST00000324817.2, ENST00000324817.3, ENST00000324817.4, ENST00000324817.5, EXLM1, MED14_HUMAN, NM_004229, O60244, Q4KMR7, Q9UNB3, RGR1, TRAP170, uc317rtc.1, uc317rtc.2
UCSC ID: ENST00000324817.6_7
RefSeq Accession: NM_004229.4
Protein: O60244 (aka MED14_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.