Human Gene METAP2 (ENST00000323666.10_5) from GENCODE V47lift37
  Description: methionyl aminopeptidase 2, transcript variant 4 (from RefSeq NR_133673.2)
Gencode Transcript: ENST00000323666.10_5
Gencode Gene: ENSG00000111142.14_10
Transcript (Including UTRs)
   Position: hg19 chr12:95,867,928-95,909,615 Size: 41,688 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr12:95,867,956-95,907,680 Size: 39,725 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:95,867,928-95,909,615)mRNA (may differ from genome)Protein (478 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AMPM2_HUMAN
DESCRIPTION: RecName: Full=Methionine aminopeptidase 2; Short=MAP 2; Short=MetAP 2; EC=3.4.11.18; AltName: Full=Initiation factor 2-associated 67 kDa glycoprotein; AltName: Full=Peptidase M 2; AltName: Full=p67eIF2; Short=p67;
FUNCTION: Removes the N-terminal methionine from nascent proteins. The catalytic activity of human METAP2 toward Met-Val peptides is consistently two orders of magnitude higher than that of METAP1, suggesting that it is responsible for processing proteins containing N-terminal Met-Val and Met-Thr sequences in vivo.
FUNCTION: Protects eukaryotic initiation factor EIF2S1 from translation-inhibiting phosphorylation by inhibitory kinases such as EIF2AK2/PKR and EIF2AK1/HCR. Plays a critical role in the regulation of protein synthesis.
CATALYTIC ACTIVITY: Release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
COFACTOR: Binds 2 cobalt ions per subunit. The true nature of the physiological cofactor is under debate. The enzyme is also active with zinc, manganese or divalent iron ions.
SUBUNIT: Interacts strongly with the eIF-2 gamma-subunit EIF2S3 (By similarity). Binds EIF2S1 at low magnesium concentrations.
SUBCELLULAR LOCATION: Cytoplasm. Note=About 30% of expressed METAP2 associates with polysomes.
PTM: Contains approximately 12 O-linked N-acetylglucosamine (GlcNAc) residues. O-glycosylation is required for EIF2A binding.
SIMILARITY: Belongs to the peptidase M24A family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: METAP2
Diseases sorted by gene-association score: microsporidiosis (7)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • C026211 fumagillin
  • D000082 Acetaminophen
  • D003993 Dibutyl Phthalate
  • C006780 bisphenol A
  • C049325 1,2-dithiol-3-thione
  • C111118 2',3,3',4',5-pentachloro-4-hydroxybiphenyl
  • C029497 2,3-bis(3'-hydroxybenzyl)butyrolactone
  • C016403 2,4-dinitrotoluene
  • C023514 2,6-dinitrotoluene
  • C438868 3,4,5-trihydroxy-2--methoxy-8,8-dimethyl-N-(hexahydro-2-oxo-6-(cyclohexylcarbonyl)oxy-2H-azepin-3-yl)non-6-enamide
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 30.23 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 825.67 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -4.3028-0.154 Picture PostScript Text
3' UTR -452.801935-0.234 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001714 - Pept_M24_MAP
IPR000994 - Pept_M24_structural-domain
IPR002468 - Pept_M24A_MAP2
IPR018349 - Pept_M24A_MAP2_BS
IPR011991 - WHTH_trsnscrt_rep_DNA-bd

Pfam Domains:
PF00557 - Metallopeptidase family M24

SCOP Domains:
46785 - "Winged helix" DNA-binding domain
55920 - Creatinase/aminopeptidase

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1B59 - X-ray MuPIT 1B6A - X-ray MuPIT 1BN5 - X-ray MuPIT 1BOA - X-ray MuPIT 1KQ0 - X-ray MuPIT 1KQ9 - X-ray MuPIT 1QZY - X-ray 1R58 - X-ray 1R5G - X-ray 1R5H - X-ray 1YW7 - X-ray MuPIT 1YW8 - X-ray MuPIT 1YW9 - X-ray MuPIT 2ADU - X-ray MuPIT 2EA2 - X-ray MuPIT 2EA4 - X-ray MuPIT 2GA2 - X-ray MuPIT 2OAZ - X-ray


ModBase Predicted Comparative 3D Structure on P50579
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0004177 aminopeptidase activity
GO:0008233 peptidase activity
GO:0008235 metalloexopeptidase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006508 proteolysis
GO:0016485 protein processing
GO:0018206 peptidyl-methionine modification
GO:0022400 regulation of rhodopsin mediated signaling pathway
GO:0031365 N-terminal protein amino acid modification

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane


-  Descriptions from all associated GenBank mRNAs
  U29607 - Human methionine aminopeptidase mRNA, complete cds.
AK125296 - Homo sapiens cDNA FLJ43306 fis, clone NT2NE2006909, highly similar to Methionine aminopeptidase 2 (EC 3.4.11.18).
AK300836 - Homo sapiens cDNA FLJ54757 complete cds, highly similar to Methionine aminopeptidase 2 (EC 3.4.11.18).
AK315559 - Homo sapiens cDNA, FLJ96630, Homo sapiens methionyl aminopeptidase 2 (METAP2), mRNA.
U13261 - Homo sapiens eIF-2-associated p67 homolog mRNA, complete cds.
AK055692 - Homo sapiens cDNA FLJ31130 fis, clone IMR322000919, highly similar to METHIONINE AMINOPEPTIDASE 2 (EC 3.4.11.18).
HM005330 - Homo sapiens clone HTL-T-17 testicular tissue protein Li 17 mRNA, complete cds.
BC013782 - Homo sapiens methionyl aminopeptidase 2, mRNA (cDNA clone MGC:17192 IMAGE:4340717), complete cds.
AK091730 - Homo sapiens cDNA FLJ34411 fis, clone HEART2002220, highly similar to METHIONINE AMINOPEPTIDASE 2 (EC 3.4.11.18).
AX747149 - Sequence 674 from Patent EP1308459.
AB463882 - Synthetic construct DNA, clone: pF1KB8108, Homo sapiens METAP2 gene for methionyl aminopeptidase 2, without stop codon, in Flexi system.
DQ894193 - Synthetic construct Homo sapiens clone IMAGE:100008653; FLH168517.01L; RZPDo839A0393D methionyl aminopeptidase 2 (METAP2) gene, encodes complete protein.
DQ891013 - Synthetic construct clone IMAGE:100003643; FLH168521.01X; RZPDo839A0394D methionyl aminopeptidase 2 (METAP2) gene, encodes complete protein.
BC016008 - Homo sapiens, Similar to methionyl aminopeptidase 2, clone IMAGE:4656931, mRNA, partial cds.
JD346849 - Sequence 327873 from Patent EP1572962.
JD119922 - Sequence 100946 from Patent EP1572962.
JD112977 - Sequence 94001 from Patent EP1572962.
JD358602 - Sequence 339626 from Patent EP1572962.
JD251302 - Sequence 232326 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-7799 - Arg/N-end rule pathway (eukaryotic)

Reactome (by CSHL, EBI, and GO)

Protein P50579 (Reactome details) participates in the following event(s):

R-HSA-2534096 METAP1/2 demethylates GNAT1
R-HSA-2514859 Inactivation, recovery and regulation of the phototransduction cascade
R-HSA-2514856 The phototransduction cascade
R-HSA-2187338 Visual phototransduction
R-HSA-418594 G alpha (i) signalling events
R-HSA-388396 GPCR downstream signalling
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: B2RDI8, B4DUX5, ENST00000323666.1, ENST00000323666.2, ENST00000323666.3, ENST00000323666.4, ENST00000323666.5, ENST00000323666.6, ENST00000323666.7, ENST00000323666.8, ENST00000323666.9, G3XA91, MAP2_HUMAN, METAP2 , MNPEP, NR_133673, P50579, P67EIF2, Q8NB11, uc317rmt.1, uc317rmt.2
UCSC ID: ENST00000323666.10_5
RefSeq Accession: NM_006838.4
Protein: P50579 (aka AMPM2_HUMAN or AMP2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.