Human Gene MGMT (ENST00000651593.1_8) from GENCODE V47lift37
  Description: O-6-methylguanine-DNA methyltransferase (from RefSeq NM_002412.5)
Gencode Transcript: ENST00000651593.1_8
Gencode Gene: ENSG00000170430.10_15
Transcript (Including UTRs)
   Position: hg19 chr10:131,265,505-131,569,247 Size: 303,743 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr10:131,334,517-131,565,261 Size: 230,745 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:131,265,505-131,569,247)mRNA (may differ from genome)Protein (207 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MGMT_HUMAN
DESCRIPTION: RecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; Short=MGMT; AltName: Full=O-6-methylguanine-DNA-alkyltransferase;
FUNCTION: Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
CATALYTIC ACTIVITY: DNA (containing 6-O-methylguanine) + protein L-cysteine = DNA (without 6-O-methylguanine) + protein S-methyl-L- cysteine.
COFACTOR: Binds 1 zinc ion.
SUBCELLULAR LOCATION: Nucleus.
MISCELLANEOUS: This enzyme catalyzes only one turnover and therefore is not strictly catalytic. According to one definition, an enzyme is a biocatalyst that acts repeatedly and over many reaction cycles.
SIMILARITY: Belongs to the MGMT family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MGMT
Diseases sorted by gene-association score: oligodendroglioma (30), brain cancer (28), malignant glioma (26), glioblastoma (25), spinal cord astrocytoma (22), glioblastoma multiforme (19), gliosarcoma* (17), giant cell glioblastoma* (16), gallbladder cancer (16), brain glioma (15), grade iii astrocytoma (15), primary central nervous system lymphoma (14), astrocytoma (11), anaplastic oligodendroglioma (11), central nervous system lymphoma (10), oligoastrocytoma (9), lung cancer (8), pleomorphic xanthoastrocytoma (8), colorectal cancer (8), anal squamous cell carcinoma (8), ependymoma (8), malignant melanoma, somatic* (7), fibrillary astrocytoma (7), pancytopenia (6), gastric leiomyoma (6), breast giant fibroadenoma (6), intracranial abscess (6), skin squamous cell carcinoma (6), colorectal adenoma (5), acoustic neuroma (5), adenosquamous pancreas carcinoma (5), medulloblastoma (4), stomach cancer (4), adenoma (4), familial adenomatous polyposis (4), lynch syndrome (2), pilocytic astrocytoma (2), cell type cancer (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -19.9068-0.293 Picture PostScript Text
3' UTR -1509.303986-0.379 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001497 - MethylDNA_cys_MeTrfase_AS
IPR014048 - MethylDNA_cys_MeTrfase_DNA-bd
IPR008332 - MethylG_MeTrfase
IPR011991 - WHTH_trsnscrt_rep_DNA-bd

Pfam Domains:
PF01035 - 6-O-methylguanine DNA methyltransferase, DNA binding domain
PF02870 - 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain

SCOP Domains:
46767 - Methylated DNA-protein cysteine methyltransferase, C-terminal domain
53155 - Methylated DNA-protein cysteine methyltransferase domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1EH6 - X-ray 1EH7 - X-ray 1EH8 - X-ray 1QNT - X-ray 1T38 - X-ray 1T39 - X-ray 1YFH - X-ray


ModBase Predicted Comparative 3D Structure on P16455
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003677 DNA binding
GO:0003824 catalytic activity
GO:0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity
GO:0005509 calcium ion binding
GO:0008168 methyltransferase activity
GO:0009008 DNA-methyltransferase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006266 DNA ligation
GO:0006281 DNA repair
GO:0006306 DNA methylation
GO:0006307 DNA dealkylation involved in DNA repair
GO:0006974 cellular response to DNA damage stimulus
GO:0009636 response to toxic substance
GO:0014070 response to organic cyclic compound
GO:0032259 methylation
GO:0034599 cellular response to oxidative stress
GO:0042493 response to drug
GO:0043066 negative regulation of apoptotic process
GO:0043281 regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0045471 response to ethanol
GO:0045739 positive regulation of DNA repair
GO:0051593 response to folic acid
GO:0060548 negative regulation of cell death
GO:0060644 mammary gland epithelial cell differentiation
GO:0071407 cellular response to organic cyclic compound
GO:0071479 cellular response to ionizing radiation
GO:2000781 positive regulation of double-strand break repair

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  LF207947 - JP 2014500723-A/15450: Polycomb-Associated Non-Coding RNAs.
AK293593 - Homo sapiens cDNA FLJ56323 complete cds, highly similar to Methylated-DNA--protein-cysteinemethyltransferase (EC 2.1.1.63).
M29971 - Human 6-O-methylguanine-DNA methyltransferase (MGMT) mRNA, complete cds.
BC000824 - Homo sapiens O-6-methylguanine-DNA methyltransferase, mRNA (cDNA clone MGC:5186 IMAGE:3454207), complete cds.
KC249995 - Homo sapiens O-6-methylguanine-DNA methyltransferase (MGMT) mRNA, partial cds.
M31767 - Human O6-methylguanine-DNA methyltransferase mRNA, complete cds.
M60761 - Human O-6-methylguanine-DNA methyltransferase mRNA, complete cds.
X54228 - H.sapiens mRNA for methyltransferase.
E02953 - cDNA sequence encoding human O6-methylguanine-DNA-methyltrausferase.
AB528701 - Synthetic construct DNA, clone: pF1KB6935, Homo sapiens MGMT gene for O-6-methylguanine-DNA methyltransferase, without stop codon, in Flexi system.
BT006714 - Homo sapiens O-6-methylguanine-DNA methyltransferase mRNA, complete cds.
DQ890723 - Synthetic construct clone IMAGE:100003353; FLH165478.01X; RZPDo839C10160D O-6-methylguanine-DNA methyltransferase (MGMT) gene, encodes complete protein.
DQ893901 - Synthetic construct Homo sapiens clone IMAGE:100008361; FLH165474.01L; RZPDo839C10159D O-6-methylguanine-DNA methyltransferase (MGMT) gene, encodes complete protein.
CU674414 - Synthetic construct Homo sapiens gateway clone IMAGE:100018576 5' read MGMT mRNA.
MA443524 - JP 2018138019-A/15450: Polycomb-Associated Non-Coding RNAs.
JD460574 - Sequence 441598 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P16455 (Reactome details) participates in the following event(s):

R-HSA-5657651 MGMT binds alkylated DNA containing 6-O-methylguanine
R-HSA-73892 MGMT/hAGT mediated DNA Damage Reversal
R-HSA-5657655 MGMT-mediated DNA damage reversal
R-HSA-73942 DNA Damage Reversal
R-HSA-73894 DNA Repair

-  Other Names for This Gene
  Alternate Gene Symbols: MGMT_HUMAN, NM_002412, P16455, Q5VY78, uc328tdz.1, uc328tdz.2
UCSC ID: ENST00000651593.1_8
RefSeq Accession: NM_002412.5
Protein: P16455 (aka MGMT_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.