Human Gene MID1IP1 (ENST00000614558.3_5) from GENCODE V47lift37
  Description: MID1 interacting protein 1, transcript variant 1 (from RefSeq NM_021242.6)
Gencode Transcript: ENST00000614558.3_5
Gencode Gene: ENSG00000165175.17_10
Transcript (Including UTRs)
   Position: hg19 chrX:38,660,712-38,665,785 Size: 5,074 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chrX:38,664,200-38,664,751 Size: 552 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:38,660,712-38,665,785)mRNA (may differ from genome)Protein (183 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: M1IP1_HUMAN
DESCRIPTION: RecName: Full=Mid1-interacting protein 1; AltName: Full=Gastrulation-specific G12-like protein; AltName: Full=Mid1-interacting G12-like protein; AltName: Full=Protein STRAIT11499; AltName: Full=Spot 14-related protein; Short=S14R; Short=Spot 14-R;
FUNCTION: Plays a role in the regulation of lipogenesis in liver. Up-regulates ACACA enzyme activity. Required for efficient lipid biosynthesis, including triacylglycerol, diacylglycerol and phospholipid. Involved in stabilization of microtubules (By similarity).
SUBUNIT: Homodimer in the absence of THRSP. Heterodimer with THRSP. The homodimer interacts with ACACA and ACACB. Promotes polymerization of Acetyl-CoA carboxylase to form complexes that contain MID1IP1 and ACACA and/or ACACB. Interaction with THRSP interferes with ACACA binding (By similarity).
SUBCELLULAR LOCATION: Nucleus (By similarity). Cytoplasm (By similarity). Cytoplasm, cytoskeleton (By similarity). Note=Associated with microtubules (By similarity).
SIMILARITY: Belongs to the SPOT14 family.
CAUTION: It is uncertain whether Met-1 or Met-2 is the initiator.
SEQUENCE CAUTION: Sequence=DAA01482.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D013749 Tetrachlorodibenzodioxin
  • D001564 Benzo(a)pyrene
  • C006253 pirinixic acid
  • C028474 1,4-bis(2-(3,5-dichloropyridyloxy))benzene
  • D015084 2,4-Dichlorophenoxyacetic Acid
  • C548651 2-(1'H-indolo-3'-carbonyl)thiazole-4-carboxylic acid methyl ester
  • C023035 3,4,5,3',4'-pentachlorobiphenyl
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • C547126 AZM551248
  • D000082 Acetaminophen
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -828.402172-0.381 Picture PostScript Text
3' UTR -369.401034-0.357 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009786 - Spot_14

Pfam Domains:
PF07084 - Thyroid hormone-inducible hepatic protein Spot 14

ModBase Predicted Comparative 3D Structure on Q9NPA3
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008022 protein C-terminus binding
GO:0042802 identical protein binding

Biological Process:
GO:0006629 lipid metabolic process
GO:0006853 carnitine shuttle
GO:0007026 negative regulation of microtubule depolymerization
GO:0045723 positive regulation of fatty acid biosynthetic process
GO:0046890 regulation of lipid biosynthetic process
GO:0051258 protein polymerization
GO:0051351 positive regulation of ligase activity

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0015630 microtubule cytoskeleton


-  Descriptions from all associated GenBank mRNAs
  LF211415 - JP 2014500723-A/18918: Polycomb-Associated Non-Coding RNAs.
BC019332 - Homo sapiens MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish)), mRNA (cDNA clone MGC:972 IMAGE:3541914), complete cds.
JD242681 - Sequence 223705 from Patent EP1572962.
JD330923 - Sequence 311947 from Patent EP1572962.
BC008908 - Homo sapiens MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish)), mRNA (cDNA clone MGC:15174 IMAGE:3638510), complete cds.
JD387433 - Sequence 368457 from Patent EP1572962.
JD190898 - Sequence 171922 from Patent EP1572962.
JD269840 - Sequence 250864 from Patent EP1572962.
JD195940 - Sequence 176964 from Patent EP1572962.
JD398556 - Sequence 379580 from Patent EP1572962.
JD157550 - Sequence 138574 from Patent EP1572962.
JD477907 - Sequence 458931 from Patent EP1572962.
JD065860 - Sequence 46884 from Patent EP1572962.
JD286159 - Sequence 267183 from Patent EP1572962.
LF379248 - JP 2014500723-A/186751: Polycomb-Associated Non-Coding RNAs.
JD510544 - Sequence 491568 from Patent EP1572962.
AJ272057 - Homo sapiens mRNA for hypothetical protein, clone STRAIT 11499.
AK001248 - Homo sapiens cDNA FLJ10386 fis, clone NT2RM2002142, weakly similar to GASTRULATION SPECIFIC PROTEIN G12.
JD520298 - Sequence 501322 from Patent EP1572962.
JD440278 - Sequence 421302 from Patent EP1572962.
JD455386 - Sequence 436410 from Patent EP1572962.
JD125355 - Sequence 106379 from Patent EP1572962.
JD250970 - Sequence 231994 from Patent EP1572962.
AB464621 - Synthetic construct DNA, clone: pF1KB8740, Homo sapiens MID1IP1 gene for MID1 interacting protein 1, without stop codon, in Flexi system.
CU679181 - Synthetic construct Homo sapiens gateway clone IMAGE:100016749 5' read MID1IP1 mRNA.
HQ447097 - Synthetic construct Homo sapiens clone IMAGE:100070381; CCSB005425_01 MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish)) (MID1IP1) gene, encodes complete protein.
KJ894475 - Synthetic construct Homo sapiens clone ccsbBroadEn_03869 MID1IP1 gene, encodes complete protein.
CR457220 - Homo sapiens full open reading frame cDNA clone RZPDo834H098D for gene STRAIT11499, hypothetical protein STRAIT11499; complete cds, incl. stopcodon.
LF379249 - JP 2014500723-A/186752: Polycomb-Associated Non-Coding RNAs.
LF379250 - JP 2014500723-A/186753: Polycomb-Associated Non-Coding RNAs.
JD439493 - Sequence 420517 from Patent EP1572962.
JD567131 - Sequence 548155 from Patent EP1572962.
JD218318 - Sequence 199342 from Patent EP1572962.
JD189651 - Sequence 170675 from Patent EP1572962.
JD442118 - Sequence 423142 from Patent EP1572962.
JD170033 - Sequence 151057 from Patent EP1572962.
AF050158 - Homo sapiens unknown mRNA, partial sequence.
JD134850 - Sequence 115874 from Patent EP1572962.
JD104647 - Sequence 85671 from Patent EP1572962.
JD222597 - Sequence 203621 from Patent EP1572962.
JD274797 - Sequence 255821 from Patent EP1572962.
JD201870 - Sequence 182894 from Patent EP1572962.
LF379252 - JP 2014500723-A/186755: Polycomb-Associated Non-Coding RNAs.
MA446992 - JP 2018138019-A/18918: Polycomb-Associated Non-Coding RNAs.
MA614825 - JP 2018138019-A/186751: Polycomb-Associated Non-Coding RNAs.
MA614826 - JP 2018138019-A/186752: Polycomb-Associated Non-Coding RNAs.
MA614827 - JP 2018138019-A/186753: Polycomb-Associated Non-Coding RNAs.
MA614829 - JP 2018138019-A/186755: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NPA3 (Reactome details) participates in the following event(s):

R-HSA-8866941 MID1IP1 binds THRSP
R-HSA-200425 Import of palmitoyl-CoA into the mitochondrial matrix
R-HSA-8978868 Fatty acid metabolism
R-HSA-556833 Metabolism of lipids
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: D3DWB2, ENST00000614558.1, ENST00000614558.2, M1IP1_HUMAN, MIG12, NM_021242, Q9NPA3, uc327pij.1, uc327pij.2
UCSC ID: ENST00000614558.3_5
RefSeq Accession: NM_021242.6
Protein: Q9NPA3 (aka M1IP1_HUMAN or CXZ1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.