Human Gene MKKS (ENST00000347364.7_6) from GENCODE V47lift37
  Description: MKKS centrosomal shuttling protein, transcript variant 3 (from RefSeq NR_072977.2)
Gencode Transcript: ENST00000347364.7_6
Gencode Gene: ENSG00000125863.20_10
Transcript (Including UTRs)
   Position: hg19 chr20:10,381,657-10,414,870 Size: 33,214 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr20:10,385,895-10,394,162 Size: 8,268 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:10,381,657-10,414,870)mRNA (may differ from genome)Protein (570 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MKKS_HUMAN
DESCRIPTION: RecName: Full=McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin; AltName: Full=Bardet-Biedl syndrome 6 protein;
FUNCTION: Probable molecular chaperone. Assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. May play a role in protein processing in limb, cardiac and reproductive system development. May play a role in cytokinesis.
SUBUNIT: Component of the BBS/CCT complex composed at least of MKKS, BBS10, BBS12, TCP1, CCT2, CCT3, CCT4, CCT5 AND CCT8. Interacts with STUB1. Interacts with BBS2 (via coiled coil domain). Interacts with CCDC28B.
INTERACTION: Q6ZW61:BBS12; NbExp=10; IntAct=EBI-721319, EBI-6128352; Q9BXC9:BBS2; NbExp=4; IntAct=EBI-721319, EBI-748297;
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, centrosome. Cytoplasm, cytosol. Note=The majority of the protein resides within the pericentriolar material (PCM), a proteinaceous tube surrounding centrioles. During interphase, the protein is confined to the lateral surfaces of the PCM but during mitosis it relocalizes throughout the PCM and is found at the intercellular bridge. The MKSS protein is highly mobile and rapidly shuttles between the cytosol and centrosome.
TISSUE SPECIFICITY: Widely expressed in adult and fetal tissues.
DOMAIN: The substrate-binding apical domain region is sufficient for centrosomal association.
DISEASE: Defects in MKKS are the cause of McKusick-Kaufman syndrome (MKKS) [MIM:236700]. MKKS is an autosomal recessive developmental disorder. It is characterized by hydrometrocolpos, postaxial polydactyly and congenital heart defects.
DISEASE: Defects in MKKS are the cause of Bardet-Biedl syndrome type 6 (BBS6) [MIM:209900]. Bardet-Biedl syndrome (BBS) is a genetically heterogeneous, autosomal recessive disorder characterized by usually severe pigmentary retinopathy, early onset obesity, polydactyly, hypogenitalism, renal malformation and mental retardation. Secondary features include diabetes mellitus, hypertension and congenital heart disease. A relatively high incidence of BBS is found in the mixed Arab populations of Kuwait and in Bedouin tribes throughout the Middle East, most likely due to the high rate of consaguinity in these populations and a founder effect.
SIMILARITY: Belongs to the TCP-1 chaperonin family.
WEB RESOURCE: Name=Mutations of the MKKS gene; Note=Retina International's Scientific Newsletter; URL="http://www.retina-international.org/files/sci-news/mkksmut.htm";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/MKKS";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MKKS
Diseases sorted by gene-association score: mckusick-kaufman syndrome* (1737), bardet-biedl syndrome 6* (1250), bardet-biedl syndrome* (335), bardet-biedl syndrome 12* (200), bardet-biedl syndrome 10* (200), bardet-biedl syndrome 2* (179), bardet-biedl syndrome 1* (141), bardet-biedl syndrome 11* (133), mkks-related bardet-biedl syndrome* (100), pyosalpinx (16), polydactyly (12), hemometra (11), laurence-moon syndrome (9), anthrax disease (9), heart disease (7), pallister-hall syndrome (6), bardet-biedl syndrome 15 (6), thrombocytopenia-absent radius syndrome (5), obesity (3), tetralogy of fallot (2), retinitis pigmentosa (2), physical disorder (1), fundus dystrophy (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.49 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 300.65 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -206.10763-0.270 Picture PostScript Text
3' UTR -982.504238-0.232 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002423 - Cpn60/TCP-1

Pfam Domains:
PF00118 - TCP-1/cpn60 chaperonin family

SCOP Domains:
48592 - GroEL equatorial domain-like
52029 - GroEL apical domain-like
54849 - GroEL-intermediate domain like

ModBase Predicted Comparative 3D Structure on Q9NPJ1
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0001103 RNA polymerase II repressing transcription factor binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0044183 protein binding involved in protein folding
GO:0051082 unfolded protein binding

Biological Process:
GO:0001947 heart looping
GO:0006457 protein folding
GO:0006458 'de novo' protein folding
GO:0007286 spermatid development
GO:0007368 determination of left/right symmetry
GO:0007507 heart development
GO:0007601 visual perception
GO:0007608 sensory perception of smell
GO:0008406 gonad development
GO:0010629 negative regulation of gene expression
GO:0014824 artery smooth muscle contraction
GO:0021756 striatum development
GO:0021766 hippocampus development
GO:0021987 cerebral cortex development
GO:0030837 negative regulation of actin filament polymerization
GO:0032402 melanosome transport
GO:0033210 leptin-mediated signaling pathway
GO:0034260 negative regulation of GTPase activity
GO:0035176 social behavior
GO:0038108 negative regulation of appetite by leptin-mediated signaling pathway
GO:0040018 positive regulation of multicellular organism growth
GO:0042311 vasodilation
GO:0044321 response to leptin
GO:0045444 fat cell differentiation
GO:0045494 photoreceptor cell maintenance
GO:0045776 negative regulation of blood pressure
GO:0046907 intracellular transport
GO:0048854 brain morphogenesis
GO:0050896 response to stimulus
GO:0050910 detection of mechanical stimulus involved in sensory perception of sound
GO:0051131 chaperone-mediated protein complex assembly
GO:0051216 cartilage development
GO:0051492 regulation of stress fiber assembly
GO:0051877 pigment granule aggregation in cell center
GO:0060027 convergent extension involved in gastrulation
GO:0060271 cilium assembly
GO:0060296 regulation of cilium beat frequency involved in ciliary motility
GO:0060324 face development
GO:0061077 chaperone-mediated protein folding
GO:1905515 non-motile cilium assembly

Cellular Component:
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0031514 motile cilium
GO:0036064 ciliary basal body
GO:1902636 kinociliary basal body


-  Descriptions from all associated GenBank mRNAs
  AK054772 - Homo sapiens cDNA FLJ30210 fis, clone BRACE2001588.
AK296439 - Homo sapiens cDNA FLJ52313 complete cds, highly similar to McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin.
AK291925 - Homo sapiens cDNA FLJ78507 complete cds.
AF221993 - Homo sapiens putative chaperonin MKKS (MKKS) mRNA, complete cds, alternatively spliced.
BC028973 - Homo sapiens McKusick-Kaufman syndrome, mRNA (cDNA clone MGC:29831 IMAGE:3921348), complete cds.
AK025741 - Homo sapiens cDNA: FLJ22088 fis, clone HEP15963.
AL157427 - Homo sapiens mRNA; cDNA DKFZp761A072 (from clone DKFZp761A072).
AF221992 - Homo sapiens putative chaperonin MKKS (MKKS) mRNA, complete cds, alternatively spliced.
AB463108 - Synthetic construct DNA, clone: pF1KB8408, Homo sapiens MKKS gene for McKusick-Kaufman syndrome, without stop codon, in Flexi system.
AM393018 - Synthetic construct Homo sapiens clone IMAGE:100001922 for hypothetical protein (MKKS gene).
DL491852 - Novel nucleic acids.
DL490423 - Novel nucleic acids.
AF075024 - Homo sapiens full length insert cDNA YI32F03.
AF275813 - Homo sapiens PNAS-117 mRNA, complete cds.
BC009180 - Homo sapiens, clone IMAGE:3954458, mRNA.
BC013287 - Homo sapiens, clone IMAGE:4052296, mRNA.
JD297165 - Sequence 278189 from Patent EP1572962.
JD073235 - Sequence 54259 from Patent EP1572962.
JD170806 - Sequence 151830 from Patent EP1572962.
JD435835 - Sequence 416859 from Patent EP1572962.
JD547772 - Sequence 528796 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K7B0, BBS6 , D3DW18, ENST00000347364.1, ENST00000347364.2, ENST00000347364.3, ENST00000347364.4, ENST00000347364.5, ENST00000347364.6, MKKS , MKKS_HUMAN, NR_072977, Q9NPJ1, uc317xmq.1, uc317xmq.2
UCSC ID: ENST00000347364.7_6
RefSeq Accession: NM_170784.3
Protein: Q9NPJ1 (aka MKKS_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene MKKS:
bbs (Bardet-Biedl Syndrome Overview)
mkks (McKusick-Kaufman Syndrome)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.