Human Gene MMP20 (ENST00000260228.3_8) from GENCODE V47lift37
  Description: matrix metallopeptidase 20 (from RefSeq NM_004771.4)
Gencode Transcript: ENST00000260228.3_8
Gencode Gene: ENSG00000137674.4_10
Transcript (Including UTRs)
   Position: hg19 chr11:102,447,563-102,496,063 Size: 48,501 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg19 chr11:102,448,057-102,496,050 Size: 47,994 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:102,447,563-102,496,063)mRNA (may differ from genome)Protein (483 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MMP20_HUMAN
DESCRIPTION: RecName: Full=Matrix metalloproteinase-20; Short=MMP-20; EC=3.4.24.-; AltName: Full=Enamel metalloproteinase; AltName: Full=Enamelysin; Flags: Precursor;
FUNCTION: Degrades amelogenin, the major protein component of the enamel matrix and two of the macromolecules characterizing the cartilage extracellular matrix: aggrecan and the cartilage oligomeric matrix protein (COMP). May play a central role in tooth enamel formation.
CATALYTIC ACTIVITY: Cleaves aggrecan at the 360-Asn-|-Phe-361 site.
COFACTOR: Binds 2 zinc ions per subunit (By similarity).
COFACTOR: Calcium (By similarity).
SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular matrix (By similarity).
TISSUE SPECIFICITY: Expressed specifically in the enamel organ.
DOMAIN: The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme.
PTM: Autoactivates at least at the 107-Asn-|-Tyr-108 site (By similarity).
DISEASE: Defects in MMP20 are the cause of amelogenesis imperfecta hypomaturation type 2A2 (AI2A2) [MIM:612529]. AI2A2 is an autosomal recessive defect of enamel formation. The disorder involves both primary and secondary dentitions. The teeth have a shiny agar jelly appearance and the enamel is softer than normal. Brown pigment is present in middle layers of enamel.
SIMILARITY: Belongs to the peptidase M10A family.
SIMILARITY: Contains 4 hemopexin-like domains.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/mmp20/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MMP20
Diseases sorted by gene-association score: amelogenesis imperfecta, type iia2* (1000), amelogenesis imperfecta hypomaturation type* (185), amelogenesis imperfecta (30), amelogenesis imperfecta, type iiia (12), teeth hard tissue disease (9), hypocalcified amelogenesis imperfecta (8), dental fluorosis (6), ameloblastoma (6), craniopharyngioma (5), tooth agenesis (3)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.18 RPKM in Testis
Total median expression: 1.41 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -93.00494-0.188 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000585 - Hemopexin/matrixin
IPR018487 - Hemopexin/matrixin_repeat
IPR024079 - MetalloPept_cat_dom
IPR001818 - Pept_M10_metallopeptidase
IPR016293 - Pept_M10A_matrix_strom
IPR021190 - Pept_M10A_matrixin
IPR021158 - Pept_M10A_Zn_BS
IPR006026 - Peptidase_Metallo
IPR002477 - Peptidoglycan-bd-like

Pfam Domains:
PF00045 - Hemopexin
PF00413 - Matrixin
PF01471 - Putative peptidoglycan binding domain

SCOP Domains:
47090 - PGBD-like
50923 - Hemopexin-like domain
52374 - Nucleotidylyl transferase
55486 - Metalloproteases ("zincins"), catalytic domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2JSD - NMR MuPIT


ModBase Predicted Comparative 3D Structure on O60882
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004222 metalloendopeptidase activity
GO:0004252 serine-type endopeptidase activity
GO:0005515 protein binding
GO:0008233 peptidase activity
GO:0008237 metallopeptidase activity
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006508 proteolysis
GO:0022617 extracellular matrix disassembly
GO:0030163 protein catabolic process
GO:0030574 collagen catabolic process
GO:0070173 regulation of enamel mineralization
GO:0097186 amelogenesis

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0031012 extracellular matrix


-  Descriptions from all associated GenBank mRNAs
  AJ296177 - Homo sapiens mRNA for enamelysin (MMP-20 gene).
JD297454 - Sequence 278478 from Patent EP1572962.
JD563785 - Sequence 544809 from Patent EP1572962.
Y12779 - H.sapiens mRNA for enamelysin.
JD553977 - Sequence 535001 from Patent EP1572962.
JD203716 - Sequence 184740 from Patent EP1572962.
JD538567 - Sequence 519591 from Patent EP1572962.
BC152741 - Synthetic construct Homo sapiens clone IMAGE:100016011, MGC:184127 matrix metallopeptidase 20 (MMP20) mRNA, encodes complete protein.
AB527354 - Synthetic construct DNA, clone: pF1KE0090, Homo sapiens MMP20 gene for matrix metallopeptidase 20, without stop codon, in Flexi system.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O60882 (Reactome details) participates in the following event(s):

R-HSA-1454781 MMP1,3,13 (2, 7-12, 19) binding by Alpha-2 macroglubulin
R-HSA-2168923 Collagen type XVIII endostatin release
R-HSA-2213200 Release of endostatin-like peptides
R-HSA-1566979 Laminin-332 degradation by laminin-322 degrading extracellular proteinases
R-HSA-1474228 Degradation of the extracellular matrix
R-HSA-1442490 Collagen degradation
R-HSA-2022090 Assembly of collagen fibrils and other multimeric structures
R-HSA-1474244 Extracellular matrix organization
R-HSA-1474290 Collagen formation

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000260228.1, ENST00000260228.2, MMP20_HUMAN, NM_004771, O60882, Q6DKT9, uc317gjf.1, uc317gjf.2
UCSC ID: ENST00000260228.3_8
RefSeq Accession: NM_004771.4
Protein: O60882 (aka MMP20_HUMAN or MM20_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.