Human Gene MMP28 (ENST00000605424.6_9) from GENCODE V47lift37
  Description: matrix metallopeptidase 28, transcript variant 1 (from RefSeq NM_024302.5)
Gencode Transcript: ENST00000605424.6_9
Gencode Gene: ENSG00000271447.6_15
Transcript (Including UTRs)
   Position: hg19 chr17:34,092,884-34,122,645 Size: 29,762 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr17:34,093,519-34,122,381 Size: 28,863 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:34,092,884-34,122,645)mRNA (may differ from genome)Protein (519 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MMP28_HUMAN
DESCRIPTION: RecName: Full=Matrix metalloproteinase-28; Short=MMP-28; EC=3.4.24.-; AltName: Full=Epilysin; Flags: Precursor;
FUNCTION: Can degrade casein. Could play a role in tissues homeostasis and repair.
COFACTOR: Binds 1 zinc ion per subunit (By similarity).
COFACTOR: Calcium (By similarity).
SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular matrix.
TISSUE SPECIFICITY: Expressed at high levels in testes and lung. Low levels are detected in kidney, pancreas and skin. Also expressed in fetal lung, brain, skeletal muscle and kidney. Expressed selectively in keratinocytes. Widely expressed in several carcinomas as well. Is up-regulated in response to injury in the skin.
DOMAIN: The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme.
PTM: The precursor is cleaved by a furin endopeptidase (By similarity).
SIMILARITY: Belongs to the peptidase M10A family.
SIMILARITY: Contains 4 hemopexin-like domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -139.60264-0.529 Picture PostScript Text
3' UTR -237.70635-0.374 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000585 - Hemopexin/matrixin
IPR018487 - Hemopexin/matrixin_repeat
IPR024079 - MetalloPept_cat_dom
IPR001818 - Pept_M10_metallopeptidase
IPR016293 - Pept_M10A_matrix_strom
IPR021190 - Pept_M10A_matrixin
IPR006026 - Peptidase_Metallo
IPR002477 - Peptidoglycan-bd-like

Pfam Domains:
PF00045 - Hemopexin
PF00413 - Matrixin
PF01471 - Putative peptidoglycan binding domain

SCOP Domains:
47090 - PGBD-like
50923 - Hemopexin-like domain
50956 - Thermostable phytase (3-phytase)
55486 - Metalloproteases ("zincins"), catalytic domain

ModBase Predicted Comparative 3D Structure on Q9H239
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
  Ensembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004222 metalloendopeptidase activity
GO:0008233 peptidase activity
GO:0008237 metallopeptidase activity
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006508 proteolysis
GO:0010760 negative regulation of macrophage chemotaxis

Cellular Component:
GO:0005576 extracellular region
GO:0005737 cytoplasm
GO:0031012 extracellular matrix


-  Descriptions from all associated GenBank mRNAs
  JF432688 - Synthetic construct Homo sapiens clone IMAGE:100073926 matrix metallopeptidase 28 (MMP28) gene, encodes complete protein.
KJ903155 - Synthetic construct Homo sapiens clone ccsbBroadEn_12549 MMP28 gene, encodes complete protein.
KJ894662 - Synthetic construct Homo sapiens clone ccsbBroadEn_04056 MMP28 gene, encodes complete protein.
AK122604 - Homo sapiens cDNA FLJ16012 fis, clone NTONG2000413, highly similar to Matrix metalloproteinase-28 precursor (EC 3.4.24.-).
JD072559 - Sequence 53583 from Patent EP1572962.
AF330002 - Homo sapiens matrix metalloprotease MMP25 mRNA, complete cds.
JD050479 - Sequence 31503 from Patent EP1572962.
JD372645 - Sequence 353669 from Patent EP1572962.
JD566317 - Sequence 547341 from Patent EP1572962.
JD432891 - Sequence 413915 from Patent EP1572962.
JD436765 - Sequence 417789 from Patent EP1572962.
JD210165 - Sequence 191189 from Patent EP1572962.
JD453459 - Sequence 434483 from Patent EP1572962.
JD370140 - Sequence 351164 from Patent EP1572962.
JD309341 - Sequence 290365 from Patent EP1572962.
JD296165 - Sequence 277189 from Patent EP1572962.
AF315683 - Homo sapiens matrix metalloproteinase 28 (MMP28) mRNA, complete cds.
BC002631 - Homo sapiens matrix metallopeptidase 28, mRNA (cDNA clone MGC:4164 IMAGE:3610296), complete cds.
AY358987 - Homo sapiens clone DNA91775 metalloprotease (UNQ1893) mRNA, complete cds.
AF219624 - Homo sapiens matrix metalloproteinase-28 precursor, mRNA, complete cds.
JD184680 - Sequence 165704 from Patent EP1572962.
JD428155 - Sequence 409179 from Patent EP1572962.
JD137072 - Sequence 118096 from Patent EP1572962.
JD461579 - Sequence 442603 from Patent EP1572962.
JD216285 - Sequence 197309 from Patent EP1572962.
JD208530 - Sequence 189554 from Patent EP1572962.
JD149825 - Sequence 130849 from Patent EP1572962.
JD464186 - Sequence 445210 from Patent EP1572962.
BC011774 - Homo sapiens matrix metallopeptidase 28, mRNA (cDNA clone IMAGE:3641019), complete cds.
JD060053 - Sequence 41077 from Patent EP1572962.
JD144171 - Sequence 125195 from Patent EP1572962.
JD214968 - Sequence 195992 from Patent EP1572962.
JD460551 - Sequence 441575 from Patent EP1572962.
JD159382 - Sequence 140406 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000605424.1, ENST00000605424.2, ENST00000605424.3, ENST00000605424.4, ENST00000605424.5, MMP25, MMP28_HUMAN, NM_024302, Q96F04, Q96TE2, Q9H239, uc327jao.1, uc327jao.2, UNQ1893/PRO4339
UCSC ID: ENST00000605424.6_9
RefSeq Accession: NM_024302.5
Protein: Q9H239 (aka MMP28_HUMAN or MM28_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.