Human Gene MRPL12 (ENST00000333676.8_4) from GENCODE V47lift37
  Description: mitochondrial ribosomal protein L12 (from RefSeq NM_002949.4)
Gencode Transcript: ENST00000333676.8_4
Gencode Gene: ENSG00000262814.8_8
Transcript (Including UTRs)
   Position: hg19 chr17:79,670,397-79,674,547 Size: 4,151 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr17:79,670,532-79,674,270 Size: 3,739 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:79,670,397-79,674,547)mRNA (may differ from genome)Protein (198 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RM12_HUMAN
DESCRIPTION: RecName: Full=39S ribosomal protein L12, mitochondrial; Short=L12mt; Short=MRP-L12; AltName: Full=5c5-2; Flags: Precursor;
SUBUNIT: Interacts with NOA1.
SUBCELLULAR LOCATION: Mitochondrion.
SIMILARITY: Belongs to the ribosomal protein L7/L12P family.
SEQUENCE CAUTION: Sequence=AAD16894.1; Type=Frameshift; Positions=Several;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MRPL12
Diseases sorted by gene-association score: brain glioblastoma multiforme (8)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -58.10135-0.430 Picture PostScript Text
3' UTR -137.30277-0.496 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015607 - Ribosomal_L12_mit
IPR014719 - Ribosomal_L7/12_C/ClpS-like
IPR013823 - Ribosomal_L7/L12_C
IPR008932 - Ribosomal_L7/L12_oligo

Pfam Domains:
PF00542 - Ribosomal protein L7/L12 C-terminal domain
PF16320 - Ribosomal protein L7/L12 dimerisation domain

SCOP Domains:
48300 - Ribosomal protein L7/12, oligomerisation (N-terminal) domain
54736 - ClpS-like

ModBase Predicted Comparative 3D Structure on P52815
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details  Gene DetailsGene Details
Gene SorterGene Sorter  Gene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding

Biological Process:
GO:0006390 transcription from mitochondrial promoter
GO:0006412 translation
GO:0045893 positive regulation of transcription, DNA-templated
GO:0070125 mitochondrial translational elongation
GO:0070126 mitochondrial translational termination

Cellular Component:
GO:0005622 intracellular
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005762 mitochondrial large ribosomal subunit
GO:0005840 ribosome


-  Descriptions from all associated GenBank mRNAs
  X79865 - H.sapiens Mrp17 mRNA.
AK297076 - Homo sapiens cDNA FLJ60124 complete cds, highly similar to Mitochondrial dicarboxylate carrier.
BC002344 - Homo sapiens mitochondrial ribosomal protein L12, mRNA (cDNA clone MGC:8610 IMAGE:2961288), complete cds.
JD497536 - Sequence 478560 from Patent EP1572962.
BC007497 - Homo sapiens mitochondrial ribosomal protein L12, mRNA (cDNA clone MGC:3660 IMAGE:2959986), complete cds.
U25041 - Homo sapiens 5C5 mRNA, complete cds.
EF036488 - Homo sapiens mitochondrial ribosomal protein L12 mRNA, partial cds; nuclear gene for mitochondrial product.
KJ892049 - Synthetic construct Homo sapiens clone ccsbBroadEn_01443 MRPL12 gene, encodes complete protein.
AF105278 - Homo sapiens 5c5-2 protein mRNA, complete cds.
JD021541 - Sequence 2565 from Patent EP1572962.
JD034984 - Sequence 16008 from Patent EP1572962.
JD472998 - Sequence 454022 from Patent EP1572962.
JD396278 - Sequence 377302 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P52815 (Reactome details) participates in the following event(s):

R-HSA-5389839 39S subunit binds 28S subunit:mRNA:fMet-tRNA
R-HSA-5419273 Hydrolysis of GTP and dissociation of 28S and 39S subunits
R-HSA-5389848 TUFM:GTP:aminoacyl-tRNA binds 55S ribosome:mRNA:fMet-tRNA
R-HSA-5389857 Peptide transfer from P-site to A-site (peptide bond formation)
R-HSA-5389842 TUFM hydrolyzes GTP and TUFM:GDP dissociates from 55S ribosome
R-HSA-5419261 55S ribosome with peptidyl-tRNA in A site binds GFM1:GTP
R-HSA-5419281 MRRF binds 55S ribosome:mRNA:tRNA
R-HSA-5419279 Translocation of peptidyl-tRNA from A-site to P-site (and translocation of 55S ribosome by 3 bases along mRNA)
R-HSA-5419264 MTRF1L (MTRF1a) or ICT1 binds stop codon in 55S ribosome:mRNA:peptidyl-tRNA
R-HSA-5419277 GFM2:GTP binds 55S ribosome:mRNA:tRNA:MRRF releasing mRNA and tRNA
R-HSA-5368286 Mitochondrial translation initiation
R-HSA-5419276 Mitochondrial translation termination
R-HSA-5368287 Mitochondrial translation
R-HSA-5389840 Mitochondrial translation elongation
R-HSA-72766 Translation
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000333676.1, ENST00000333676.2, ENST00000333676.3, ENST00000333676.4, ENST00000333676.5, ENST00000333676.6, ENST00000333676.7, MRPL7, NM_002949, P52815, Q969U0, Q9HCA2, Q9UQJ3, RM12_HUMAN, RPML12, uc317tsq.1, uc317tsq.2
UCSC ID: ENST00000333676.8_4
RefSeq Accession: NM_002949.4
Protein: P52815 (aka RM12_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.