Human Gene MRPS23 (ENST00000313608.13_7) from GENCODE V47lift37
  Description: mitochondrial ribosomal protein S23 (from RefSeq NM_016070.4)
Gencode Transcript: ENST00000313608.13_7
Gencode Gene: ENSG00000181610.13_9
Transcript (Including UTRs)
   Position: hg19 chr17:55,912,142-55,927,405 Size: 15,264 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr17:55,917,144-55,927,371 Size: 10,228 Coding Exon Count: 5 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:55,912,142-55,927,405)mRNA (may differ from genome)Protein (190 aa)
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RT23_HUMAN
DESCRIPTION: RecName: Full=28S ribosomal protein S23, mitochondrial; Short=MRP-S23; Short=S23mt;
SUBUNIT: Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins (By similarity).
SUBCELLULAR LOCATION: Mitochondrion.
SEQUENCE CAUTION: Sequence=AAD34133.1; Type=Frameshift; Positions=138; Sequence=AAF29007.1; Type=Frameshift; Positions=Several;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MRPS23
Diseases sorted by gene-association score: mitochondrial disorders (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 46.32 RPKM in Heart - Left Ventricle
Total median expression: 999.89 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -4.7034-0.138 Picture PostScript Text
3' UTR -1797.605002-0.359 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR023611 - Ribosomal_S23/S25_mit
IPR019520 - Ribosomal_S23_mit

Pfam Domains:
PF10484 - Mitochondrial ribosomal protein S23

ModBase Predicted Comparative 3D Structure on Q9Y3D9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding

Biological Process:
GO:0006412 translation
GO:0070125 mitochondrial translational elongation
GO:0070126 mitochondrial translational termination

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005840 ribosome
GO:0031965 nuclear membrane
GO:0045111 intermediate filament cytoskeleton


-  Descriptions from all associated GenBank mRNAs
  JD063166 - Sequence 44190 from Patent EP1572962.
JD472395 - Sequence 453419 from Patent EP1572962.
JD472396 - Sequence 453420 from Patent EP1572962.
JD472397 - Sequence 453421 from Patent EP1572962.
JD117500 - Sequence 98524 from Patent EP1572962.
AF151896 - Homo sapiens CGI-138 protein mRNA, complete cds.
AF161447 - Homo sapiens HSPC329 mRNA, partial cds.
BC000242 - Homo sapiens mitochondrial ribosomal protein S23, mRNA (cDNA clone MGC:676 IMAGE:3350325), complete cds.
JD552522 - Sequence 533546 from Patent EP1572962.
JD061276 - Sequence 42300 from Patent EP1572962.
AK312729 - Homo sapiens cDNA, FLJ93135, Homo sapiens mitochondrial ribosomal protein S23 (MRPS23), nucleargene encoding mitochondrial protein, mRNA.
KJ893960 - Synthetic construct Homo sapiens clone ccsbBroadEn_03354 MRPS23 gene, encodes complete protein.
JD024474 - Sequence 5498 from Patent EP1572962.
JD492223 - Sequence 473247 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9Y3D9 (Reactome details) participates in the following event(s):

R-HSA-5368279 MTIF3 binds 28S ribosomal subunit
R-HSA-5419273 Hydrolysis of GTP and dissociation of 28S and 39S subunits
R-HSA-5389849 28S subunit:MTIF3 binds MTIF2:GTP, mRNA, and formylMet-tRNA
R-HSA-5389839 39S subunit binds 28S subunit:mRNA:fMet-tRNA
R-HSA-5389848 TUFM:GTP:aminoacyl-tRNA binds 55S ribosome:mRNA:fMet-tRNA
R-HSA-5389857 Peptide transfer from P-site to A-site (peptide bond formation)
R-HSA-5389842 TUFM hydrolyzes GTP and TUFM:GDP dissociates from 55S ribosome
R-HSA-5419261 55S ribosome with peptidyl-tRNA in A site binds GFM1:GTP
R-HSA-5419281 MRRF binds 55S ribosome:mRNA:tRNA
R-HSA-5419279 Translocation of peptidyl-tRNA from A-site to P-site (and translocation of 55S ribosome by 3 bases along mRNA)
R-HSA-5419264 MTRF1L (MTRF1a) or ICT1 binds stop codon in 55S ribosome:mRNA:peptidyl-tRNA
R-HSA-5419277 GFM2:GTP binds 55S ribosome:mRNA:tRNA:MRRF releasing mRNA and tRNA
R-HSA-5368286 Mitochondrial translation initiation
R-HSA-5419276 Mitochondrial translation termination
R-HSA-5368287 Mitochondrial translation
R-HSA-5389840 Mitochondrial translation elongation
R-HSA-72766 Translation
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: B2R6V3, CGI-138, ENST00000313608.1, ENST00000313608.10, ENST00000313608.11, ENST00000313608.12, ENST00000313608.2, ENST00000313608.3, ENST00000313608.4, ENST00000313608.5, ENST00000313608.6, ENST00000313608.7, ENST00000313608.8, ENST00000313608.9, HSPC329, NM_016070, Q96Q24, Q9BWH8, Q9P053, Q9Y3D9, RT23_HUMAN, uc317pll.1, uc317pll.2
UCSC ID: ENST00000313608.13_7
RefSeq Accession: NM_016070.4
Protein: Q9Y3D9 (aka RT23_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.