Human Gene MT-RNR2 (ENST00000387347.2) from GENCODE V47lift37
  Description: microRNA 4485 (from RefSeq NR_039705.1)
Gencode Transcript: ENST00000387347.2
Gencode Gene: ENSG00000210082.2
Transcript (Including UTRs)
   Position: hg19 chrM:1,673-3,230 Size: 1,558 Total Exon Count: 1 Strand: +


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrM:1,673-3,230)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaEnsembl
Entrez GeneExonPrimerHGNCPubMedBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 55966.70 RPKM in Brain - Amygdala
Total median expression: 719597.94 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LP895143 - Sequence 7 from Patent EP3253886.
AK026634 - Homo sapiens cDNA: FLJ22981 fis, clone KAT11391, highly similar to HUMTI227HC Human mRNA for TI-227H.
DQ597483 - Homo sapiens piRNA piR-35549, complete sequence.
DQ597484 - Homo sapiens piRNA piR-35550, complete sequence.
DQ597485 - Homo sapiens piRNA piR-35551, complete sequence.
LF641695 - JP 2016519084-A/200: Antisense Oligonucleotides for Treatment of Cancer Stem Cells.
LF641696 - JP 2016519084-A/201: Antisense Oligonucleotides for Treatment of Cancer Stem Cells.
LF641697 - JP 2016519084-A/202: Antisense Oligonucleotides for Treatment of Cancer Stem Cells.
LQ059297 - Sequence 200 from Patent EP2970970.
LQ059298 - Sequence 201 from Patent EP2970970.
LQ059299 - Sequence 202 from Patent EP2970970.
MA264841 - JP 2017508467-A/161: PHARMACEUTICAL COMPOSITIONS COMPRISING RNA AND USE FOR TREATING CANCER.
MA264842 - JP 2017508467-A/162: PHARMACEUTICAL COMPOSITIONS COMPRISING RNA AND USE FOR TREATING CANCER.
MA264843 - JP 2017508467-A/163: PHARMACEUTICAL COMPOSITIONS COMPRISING RNA AND USE FOR TREATING CANCER.
MS942517 - Sequence 161 from Patent EP3116513.
MS942518 - Sequence 162 from Patent EP3116513.
MS942519 - Sequence 163 from Patent EP3116513.
X51525 - Human cortex mRNA containing an Alu repetitive element (clone pHC22).
AY029066 - Homo sapiens Humanin (HN1) mRNA, complete cds.
U25123 - Human 16S ribosomal RNA homolog mRNA, mitochondrial gene encoding mitochondrial rRNA, partial sequence.
BC000845 - Homo sapiens cDNA clone IMAGE:3457769, partial cds.
BC018940 - Homo sapiens, clone IMAGE:4126047, mRNA.
AB462504 - Homo sapiens TVAS5 mRNA, PBMC-based diagnostic gene marker for vasculitis.
BC008007 - Homo sapiens, clone IMAGE:3510538, mRNA.
BC035825 - Homo sapiens, clone IMAGE:5586216, mRNA.
BC035832 - Homo sapiens, clone IMAGE:5581122, mRNA.
AB019564 - Homo sapiens mRNA expressed only in placental villi, clone SMAP47.
Y17170 - Homo sapiens mRNA from HIV-associated non-Hodgkin's lymphoma (clone hl2-1).
AK126611 - Homo sapiens cDNA FLJ44648 fis, clone BRACE2035191.
AF054990 - Homo sapiens clone 23884 mRNA sequence.
DQ597482 - Homo sapiens piRNA piR-35548, complete sequence.
BC006998 - Homo sapiens, clone IMAGE:4052494, mRNA.
DQ597990 - Homo sapiens piRNA piR-36056, complete sequence.
Y17174 - Homo sapiens mRNA from HIV-associated non-Hodgkin's lymphoma (clone hl2-254).
BC018865 - Homo sapiens, clone IMAGE:3141129, mRNA.
AX229885 - Sequence 11 from Patent WO0162959.
DQ593671 - Homo sapiens piRNA piR-33783, complete sequence.
AK026170 - Homo sapiens cDNA: FLJ22517 fis, clone HRC12186.
BC009316 - Homo sapiens, Similar to NADH dehydrogenase 1, clone IMAGE:4120469, mRNA.
HZ082710 - JP 2015513906-A/67: Stem Cell Microparticles.
HZ436491 - JP 2015529450-A/67: Stem Cell Microparticles.
HZ481652 - JP 2015535430-A/2158: TERMINALLY MODIFIED RNA.
HZ791583 - JP 2016504050-A/3328: SIGNAL-SENSOR POLYNUCLEOTIDES FOR THE ALTERATION OF CELLULAR PHENOTYPES.
JC171695 - Sequence 67 from Patent WO2013150303.
JC514315 - Sequence 4568 from Patent WO2014113089.
JC572506 - Sequence 67 from Patent WO2014125276.
JC582194 - Sequence 67 from Patent WO2014125277.
JE953890 - Sequence 67 from Patent WO2015052526.
JE955643 - Sequence 67 from Patent WO2015052527.
LF137395 - JP 2016507550-A/67: Method of Producing Microparticles.
LF160971 - JP 2016513950-A/1037: Oligomers with improved off-target profile.
LF162360 - JP 2016513095-A/67: Stem Cell Microparticles and miRNA.
LF953112 - JP 2016534103-A/67: Stem Cell Microparticles and miRNA.
LG005457 - KR 1020150004822-A/67: STEM CELL MICROPARTICLES.
LG053153 - KR 1020150059168-A/67: STEM CELL MICROPARTICLES.
LG240392 - KR 1020160035087-A/67: STEM CELL MICROPARTICLES AND MIRNA.
LP782011 - Sequence 16 from Patent WO2018055093.
LP896718 - Sequence 1582 from Patent EP3253886.
LQ071903 - Sequence 2227 from Patent EP2964234.
LV470477 - JP 2016534036-A/67: Stem Cell Microparticles and miRNA.
DQ596723 - Homo sapiens piRNA piR-34789, complete sequence.
AB462505 - Homo sapiens TVAS6 mRNA, PBMC-based diagnostic gene marker for vasculitis.
JA693711 - Sequence 1 from Patent WO2011154553.
DQ571874 - Homo sapiens piRNA piR-31986, complete sequence.
DQ571875 - Homo sapiens piRNA piR-31987, complete sequence.
DQ571524 - Homo sapiens piRNA piR-31636, complete sequence.
DQ596276 - Homo sapiens piRNA piR-34342, complete sequence.
MA645404 - JP 2017113010-A/3328: SIGNAL-SENSOR POLYNUCLEOTIDES FOR THE ALTERATION OF CELLULAR PHENOTYPES.
MA733288 - JP 2017140048-A/2158: TERMINALLY MODIFIED RNA.
MA405391 - WO 2018155427-A/165: A probe with reduced false positive binding, a method to desing the probe, and the use thereof.
MA802457 - JP 2018183181-A/3328: SIGNAL-SENSOR POLYNUCLEOTIDES FOR THE ALTERATION OF CELLULAR PHENOTYPES.
MA822908 - WO 2019004436-A/721: Kit, device, and method for detection of lung cancer.
MP129167 - Sequence 67 from Patent EP3470073.
MP162090 - Sequence 67 from Patent WO2019069093.
MP168080 - Sequence 87 from Patent EP3469101.
MB407993 - WO 2019159884-A/1483: Kit, device, and method for detection of dementia.
MB407950 - WO 2019159884-A/1440: Kit, device, and method for detection of dementia.
MB473171 - WO 2019208671-A/570: Kit or device and method for detecting bladder cancer.
MB481507 - JP 2019528758-A/87: Methods And Compositions For Prostate Cancer Diagnosis And Treatment.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000387347.1, NR_039705, uc318sxk.1
UCSC ID: ENST00000387347.2
RefSeq Accession: NM_000014.6

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.