Human Gene MUC19 (ENST00000454784.10_7) from GENCODE V47lift37
  Description: mucin 19, oligomeric (from RefSeq NM_173600.2)
Gencode Transcript: ENST00000454784.10_7
Gencode Gene: ENSG00000205592.16_14
Transcript (Including UTRs)
   Position: hg19 chr12:40,787,250-40,964,448 Size: 177,199 Total Exon Count: 173 Strand: +
Coding Region
   Position: hg19 chr12:40,787,250-40,964,448 Size: 177,199 Coding Exon Count: 173 

Page IndexSequence and LinksPrimersMalaCardsCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:40,787,250-40,964,448)mRNA (may differ from genome)Protein (8222 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MUC19
Diseases sorted by gene-association score: colorectal cancer 1 (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.69 RPKM in Minor Salivary Gland
Total median expression: 7.45 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGD  WormBase 
    Protein Sequence 
    Alignment 

-  Descriptions from all associated GenBank mRNAs
  HM801842 - Homo sapiens MUC19 variant 12 (MUC19) mRNA, complete cds, alternatively spliced.
HM801843 - Homo sapiens MUC19 variant 1 (MUC19) mRNA, partial cds, alternatively spliced.
HM801844 - Homo sapiens MUC19 variant 2 (MUC19) mRNA, partial cds, alternatively spliced.
HM801845 - Homo sapiens MUC19 variant 3 (MUC19) mRNA, partial cds, alternatively spliced.
HM801846 - Homo sapiens MUC19 variant 4 (MUC19) mRNA, partial cds, alternatively spliced.
HM801847 - Homo sapiens MUC19 variant 5 (MUC19) mRNA, partial cds, alternatively spliced.
HM801848 - Homo sapiens MUC19 variant 6 (MUC19) mRNA, partial cds, alternatively spliced.
HM801849 - Homo sapiens MUC19 variant 7 (MUC19) mRNA, partial cds, alternatively spliced.
HM801850 - Homo sapiens MUC19 variant 8 (MUC19) mRNA, partial cds, alternatively spliced.
HM801851 - Homo sapiens MUC19 variant 9 (MUC19) mRNA, partial cds, alternatively spliced.
HM801852 - Homo sapiens MUC19 variant 10 (MUC19) mRNA, partial cds, alternatively spliced.
HM801853 - Homo sapiens MUC19 variant 11 (MUC19) mRNA, partial cds, alternatively spliced.
HM801855 - Homo sapiens MUC19 variant 13 (MUC19) mRNA, partial cds, alternatively spliced.
HM801856 - Homo sapiens MUC19 variant 14 (MUC19) mRNA, partial cds, alternatively spliced.
HM801857 - Homo sapiens MUC19 variant 15-like (MUC19) mRNA, partial sequence, alternatively spliced.
HM801858 - Homo sapiens MUC19 variant 16-like (MUC19) mRNA, partial sequence, alternatively spliced.
HM801859 - Homo sapiens MUC19 variant 17 (MUC19) mRNA, partial cds, alternatively spliced.
HM801860 - Homo sapiens MUC19 variant 18 (MUC19) mRNA, partial cds, alternatively spliced.
HM801861 - Homo sapiens MUC19 variant 19 (MUC19) mRNA, partial cds, alternatively spliced.
HM801862 - Homo sapiens MUC19 variant 20 (MUC19) mRNA, partial cds, alternatively spliced.
CR749517 - Homo sapiens mRNA; cDNA DKFZp686N11246 (from clone DKFZp686N11246).
AY236870 - Homo sapiens MUC19 mRNA, partial cds.
AK093065 - Homo sapiens cDNA FLJ35746 fis, clone TESTI2004399, moderately similar to APOMUCIN.
AX747898 - Sequence 1423 from Patent EP1308459.
JD452097 - Sequence 433121 from Patent EP1572962.
JD496773 - Sequence 477797 from Patent EP1572962.
JD555394 - Sequence 536418 from Patent EP1572962.
JD345080 - Sequence 326104 from Patent EP1572962.
JD511318 - Sequence 492342 from Patent EP1572962.
JD319120 - Sequence 300144 from Patent EP1572962.
JD350838 - Sequence 331862 from Patent EP1572962.
JD163255 - Sequence 144279 from Patent EP1572962.
JD449302 - Sequence 430326 from Patent EP1572962.
JD311065 - Sequence 292089 from Patent EP1572962.
JD495125 - Sequence 476149 from Patent EP1572962.
JD054386 - Sequence 35410 from Patent EP1572962.
JD369810 - Sequence 350834 from Patent EP1572962.
JD155437 - Sequence 136461 from Patent EP1572962.
JD379447 - Sequence 360471 from Patent EP1572962.
JD504046 - Sequence 485070 from Patent EP1572962.
JD315211 - Sequence 296235 from Patent EP1572962.
JD274419 - Sequence 255443 from Patent EP1572962.
JD043370 - Sequence 24394 from Patent EP1572962.
JD563376 - Sequence 544400 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000454784.1, ENST00000454784.2, ENST00000454784.3, ENST00000454784.4, ENST00000454784.5, ENST00000454784.6, ENST00000454784.7, ENST00000454784.8, ENST00000454784.9, NM_173600, uc320vwx.1, uc320vwx.2
UCSC ID: ENST00000454784.10_7
RefSeq Accession: NM_173600.2

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.