Human Gene MYO1C (ENST00000648651.1_8) from GENCODE V47lift37
  Description: myosin IC, transcript variant 1 (from RefSeq NM_001080779.2)
Gencode Transcript: ENST00000648651.1_8
Gencode Gene: ENSG00000197879.17_16
Transcript (Including UTRs)
   Position: hg19 chr17:1,367,480-1,395,980 Size: 28,501 Total Exon Count: 32 Strand: -
Coding Region
   Position: hg19 chr17:1,369,020-1,395,781 Size: 26,762 Coding Exon Count: 32 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:1,367,480-1,395,980)mRNA (may differ from genome)Protein (1063 aa)
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-  Comments and Description Text from UniProtKB
  ID: MYO1C_HUMAN
DESCRIPTION: RecName: Full=Unconventional myosin-Ic; AltName: Full=Myosin I beta; Short=MMI-beta; Short=MMIb;
FUNCTION: Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments. Involved in glucose transporter recycling in response to insulin by regulating movement of intracellular GLUT4-containing vesicles to the plasma membrane. Component of the hair cell's (the sensory cells of the inner ear) adaptation-motor complex. Acts as a mediator of adaptation of mechanoelectrical transduction in stereocilia of vestibular hair cells. Binds phosphoinositides and links the actin cytoskeleton to cellular membranes (By similarity).
FUNCTION: Isoform 3 is involved in regulation of transcription. Associated with transcriptional active ribosomal genes. Appears to cooperate with the WICH chromatin-remodeling complex to facilitate transcription. Necessary for the formation of the first phosphodiester bond during transcription initiation (By similarity).
SUBUNIT: Interacts (via its IQ motifs) with calmodulin. Interacts (via its IQ motifs) with CABP1 and CIB1; the interaction with CABP1 and CIB1 is calcium-dependent. Interacts (via tail domain) with PLEKHB1 (via PH domain); the interaction is not affected by the presence or absence of calcium and calmodulin. Interacts with POLR1A and POLR2A. Component of the B-WICH complex, at least composed of SMARCA5/SNF2H, BAZ1B/WSTF, SF3B1, DEK, MYO1C, ERCC6, MYBBP1A and DDX21 (By similarity). Interacts with RPS6 and actin.
SUBCELLULAR LOCATION: Cytoplasm. Cell membrane (By similarity). Cell projection, stereocilium membrane (By similarity). Note=Colocalizes with CABP1 and CIB1 at cell margin, membrane ruffles and punctate regions on the cell membrane. Colocalizes in adipocytes with GLUT4 in actin-based membranes. Localizes transiently at cell membrane to region known to be enriched in PIP2. Activation of phospholipase C results in its redistribution to the cytoplasm (By similarity).
SUBCELLULAR LOCATION: Isoform 3: Nucleus, nucleoplasm. Nucleus, nucleolus. Nucleus, nuclear pore complex. Note=Colocalizes with RNA polymerase II in the nucleus. Colocalizes with RNA polymerase I in nucleoli (By similarity). In the nucleolus, is localized predominantly in dense fibrillar component (DFC) and in granular component (GC). Accumulates strongly in DFC and GC during activation of transcription. Colocalizes with transcription sites. Colocalizes in the granular cortex at the periphery of the nucleolus with RPS6. Colocalizes in nucleoplasm with RPS6 and actin that are in contact with RNP particles. Colocalizes with RPS6 at the nuclear pore level.
DOMAIN: Binds directly to large unilamellar vesicles (LUVs) containing phosphatidylinositol 4,5-bisphosphate (PIP2) or inositol 1,4,5-trisphosphate (InsP3). The PIP2-binding site corresponds to a putative PH domain present in its tail domain (By similarity).
PTM: Isoform 2 contains a N-acetylmethionine at position 1.
SIMILARITY: Contains 2 IQ domains.
SIMILARITY: Contains 1 myosin head-like domain.
CAUTION: Represents a unconventional myosin. This protein should not be confused with the conventional myosin-1 (MYH1).
SEQUENCE CAUTION: Sequence=AAH68013.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAE06097.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=BAF85599.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MYO1C
Diseases sorted by gene-association score: autosomal dominant non-syndromic sensorineural deafness type dfna* (157), amebiasis (7)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -89.30199-0.449 Picture PostScript Text
3' UTR -595.701540-0.387 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000048 - IQ_motif_EF-hand-BS
IPR001609 - Myosin_head_motor_dom
IPR010926 - Myosin_tail_2

Pfam Domains:
PF00063 - Myosin head (motor domain)
PF00612 - IQ calmodulin-binding motif
PF06017 - Unconventional myosin tail, actin- and lipid-binding

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases
53795 - PEP carboxykinase-like

ModBase Predicted Comparative 3D Structure on O00159
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000146 microfilament motor activity
GO:0000166 nucleotide binding
GO:0003774 motor activity
GO:0003777 microtubule motor activity
GO:0003779 actin binding
GO:0005102 receptor binding
GO:0005515 protein binding
GO:0005516 calmodulin binding
GO:0005524 ATP binding
GO:0008017 microtubule binding
GO:0008022 protein C-terminus binding
GO:0017160 Ral GTPase binding
GO:0030898 actin-dependent ATPase activity
GO:0051015 actin filament binding

Biological Process:
GO:0006605 protein targeting
GO:0006612 protein targeting to membrane
GO:0007018 microtubule-based movement
GO:0015031 protein transport
GO:0030050 vesicle transport along actin filament
GO:0030335 positive regulation of cell migration
GO:0030838 positive regulation of actin filament polymerization
GO:0038089 positive regulation of cell migration by vascular endothelial growth factor signaling pathway
GO:0038096 Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0045815 positive regulation of gene expression, epigenetic
GO:0051028 mRNA transport
GO:0071346 cellular response to interferon-gamma
GO:0090314 positive regulation of protein targeting to membrane
GO:1900078 positive regulation of cellular response to insulin stimulus
GO:1900748 positive regulation of vascular endothelial growth factor signaling pathway
GO:2000810 regulation of bicellular tight junction assembly

Cellular Component:
GO:0001726 ruffle
GO:0005634 nucleus
GO:0005643 nuclear pore
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005902 microvillus
GO:0005903 brush border
GO:0009925 basal plasma membrane
GO:0016020 membrane
GO:0016328 lateral plasma membrane
GO:0016459 myosin complex
GO:0016461 unconventional myosin complex
GO:0016604 nuclear body
GO:0030659 cytoplasmic vesicle membrane
GO:0031410 cytoplasmic vesicle
GO:0031941 filamentous actin
GO:0032420 stereocilium
GO:0032421 stereocilium bundle
GO:0032587 ruffle membrane
GO:0042995 cell projection
GO:0045121 membrane raft
GO:0045335 phagocytic vesicle
GO:0060171 stereocilium membrane
GO:0070062 extracellular exosome
GO:0001725 stress fiber


-  Descriptions from all associated GenBank mRNAs
  JD426376 - Sequence 407400 from Patent EP1572962.
JD103106 - Sequence 84130 from Patent EP1572962.
JD192868 - Sequence 173892 from Patent EP1572962.
JD382485 - Sequence 363509 from Patent EP1572962.
BC044891 - Homo sapiens myosin IC, mRNA (cDNA clone MGC:21326 IMAGE:4470566), complete cds.
AK172742 - Homo sapiens cDNA FLJ23903 fis, clone ADKA02341, highly similar to Myosin Ic.
BC068013 - Homo sapiens myosin IC, mRNA (cDNA clone MGC:70419 IMAGE:6144867), complete cds.
AB210015 - Homo sapiens mRNA for MYO1C variant protein, clone: fj03007.
JD177428 - Sequence 158452 from Patent EP1572962.
JD125522 - Sequence 106546 from Patent EP1572962.
JD055140 - Sequence 36164 from Patent EP1572962.
JD306264 - Sequence 287288 from Patent EP1572962.
JD036899 - Sequence 17923 from Patent EP1572962.
JD434417 - Sequence 415441 from Patent EP1572962.
JD557157 - Sequence 538181 from Patent EP1572962.
JD395307 - Sequence 376331 from Patent EP1572962.
JD125521 - Sequence 106545 from Patent EP1572962.
JD306263 - Sequence 287287 from Patent EP1572962.
JD169579 - Sequence 150603 from Patent EP1572962.
JD084392 - Sequence 65416 from Patent EP1572962.
JD025822 - Sequence 6846 from Patent EP1572962.
JD022119 - Sequence 3143 from Patent EP1572962.
JD031516 - Sequence 12540 from Patent EP1572962.
AK292910 - Homo sapiens cDNA FLJ77245 complete cds, highly similar to Homo sapiens myosin IC (MYO1C), mRNA.
AK295761 - Homo sapiens cDNA FLJ53573 complete cds, highly similar to Myosin Ic.
JD343745 - Sequence 324769 from Patent EP1572962.
X98507 - H.sapiens mRNA for myosin-I beta.
JD142146 - Sequence 123170 from Patent EP1572962.
JD196989 - Sequence 178013 from Patent EP1572962.
JD252119 - Sequence 233143 from Patent EP1572962.
JD116309 - Sequence 97333 from Patent EP1572962.
JD121923 - Sequence 102947 from Patent EP1572962.
JD436865 - Sequence 417889 from Patent EP1572962.
JD525826 - Sequence 506850 from Patent EP1572962.
JD538891 - Sequence 519915 from Patent EP1572962.
KJ897217 - Synthetic construct Homo sapiens clone ccsbBroadEn_06611 MYO1C gene, encodes complete protein.
KR711385 - Synthetic construct Homo sapiens clone CCSBHm_00023333 MYO1C (MYO1C) mRNA, encodes complete protein.
KR711386 - Synthetic construct Homo sapiens clone CCSBHm_00023335 MYO1C (MYO1C) mRNA, encodes complete protein.
KR711387 - Synthetic construct Homo sapiens clone CCSBHm_00023336 MYO1C (MYO1C) mRNA, encodes complete protein.
KR711388 - Synthetic construct Homo sapiens clone CCSBHm_00023338 MYO1C (MYO1C) mRNA, encodes complete protein.
AB384370 - Synthetic construct DNA, clone: pF1KSDB0033, Homo sapiens MYO1C gene for myosin-Ic, complete cds, without stop codon, in Flexi system.
AK304782 - Homo sapiens cDNA FLJ52405 complete cds, highly similar to Myosin Ic.
JD020179 - Sequence 1203 from Patent EP1572962.
JD034376 - Sequence 15400 from Patent EP1572962.
BC127784 - Homo sapiens myosin IC, mRNA (cDNA clone IMAGE:40134455), partial cds.
CU686603 - Synthetic construct Homo sapiens gateway clone IMAGE:100022870 5' read MYO1C mRNA.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O00159 (Reactome details) participates in the following event(s):

R-HSA-2316349 RALA:GTP binds MYO1C:CALM1 and activates MYO1C
R-HSA-1445148 Translocation of GLUT4 to the plasma membrane
R-HSA-2029482 Regulation of actin dynamics for phagocytic cup formation
R-HSA-199991 Membrane Trafficking
R-HSA-2029480 Fcgamma receptor (FCGR) dependent phagocytosis
R-HSA-5653656 Vesicle-mediated transport
R-HSA-168249 Innate Immune System
R-HSA-168256 Immune System
R-HSA-5250947 B-WICH complex binds rDNA promoter
R-HSA-5250930 B-WICH recruits histone acetyltransferases
R-HSA-5250938 B-WICH:histone acetyltransferase acetylates histone H3 at lysine-9
R-HSA-5250924 B-WICH complex positively regulates rRNA expression
R-HSA-5250913 Positive epigenetic regulation of rRNA expression
R-HSA-212165 Epigenetic regulation of gene expression
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: MYO1C_HUMAN, NM_001080779, O00159, Q4LE56, Q6NVJ7, Q86Y95, uc328pcw.1, uc328pcw.2
UCSC ID: ENST00000648651.1_8
RefSeq Accession: NM_001080779.2
Protein: O00159 (aka MYO1C_HUMAN or MY1C_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.