Human Gene MYO5A (ENST00000399233.7_12) from GENCODE V47lift37
  Description: myosin VA, transcript variant 4 (from RefSeq NM_001382348.1)
Gencode Transcript: ENST00000399233.7_12
Gencode Gene: ENSG00000197535.16_18
Transcript (Including UTRs)
   Position: hg19 chr15:52,599,480-52,821,077 Size: 221,598 Total Exon Count: 42 Strand: -
Coding Region
   Position: hg19 chr15:52,605,893-52,821,003 Size: 215,111 Coding Exon Count: 42 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:52,599,480-52,821,077)mRNA (may differ from genome)Protein (1880 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MYO5A_HUMAN
DESCRIPTION: RecName: Full=Unconventional myosin-Va; AltName: Full=Dilute myosin heavy chain, non-muscle; AltName: Full=Myosin heavy chain 12; AltName: Full=Myosin-12; AltName: Full=Myoxin;
FUNCTION: Processive actin-based motor that can move in large steps approximating the 36-nm pseudo-repeat of the actin filament. Involved in melanosome transport. Also mediates the transport of vesicles to the plasma membrane. May also be required for some polarization process involved in dendrite formation.
SUBUNIT: May be a homodimer, which associates with multiple calmodulin or myosin light chains. Binds MLPH and MYRIP. Interacts with RIPL2, the interaction is required for its role in dendrite formation (By similarity). Interacts with RAB10; mediates the transport to the plasma membrane of SLC2A4/GLUT4 storage vesicles.
TISSUE SPECIFICITY: Detected in melanocytes.
DISEASE: Defects in MYO5A are a cause of Griscelli syndrome type 1 (GS1) [MIM:214450]; also known as Griscelli syndrome with primary neurologic impairment. Griscelli syndrome is a rare autosomal recessive disorder that results in pigmentary dilution of the skin and hair, the presence of large clumps of pigment in hair shafts, silvery-gray hair and accumulation of melanosomes in melanocytes. GS1 patients show developmental delay, hypotonia and mental retardation, without apparent immune abnormalities.
DISEASE: Defects in MYO5A are a cause of Griscelli syndrome type 3 (GS3) [MIM:609227]. GS3 is characterized by pigmentary dilution of the skin and hair, the presence of large clumps of pigment in hair shafts, silvery-gray hair and accumulation of melanosomes in melanocytes, without other clinical manifestations.
DISEASE: Defects in MYO5A are a cause of Elejalde syndrome (ELEJAS) [MIM:256710]; also known as neuroectodermal melanolysosomal disease. Elejalde syndrome is an autosomal recessive condition characterized by skin hypopigmentation, the presence of large clumps of pigment in hair shafts, silvery-gray hair, accumulation of melanosomes in melanocytes and primary neurological abnormalities. Elejalde syndrome may be the same entity as Griscelli syndrome type 1.
SIMILARITY: Contains 1 dilute domain.
SIMILARITY: Contains 6 IQ domains.
SIMILARITY: Contains 1 myosin head-like domain.
WEB RESOURCE: Name=MYO5Abase; Note=MYO5A mutation db; URL="http://bioinf.uta.fi/MYO5Abase/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MYO5A
Diseases sorted by gene-association score: griscelli syndrome, type 1* (1397), griscelli syndrome, type 3* (549), elejalde disease* (369), visual epilepsy* (283), dystonia* (231), seizure disorder* (200), griscelli syndrome (28), griscelli syndrome, type 2 (12), cardiomyopathy, dilated, 1p (7), piebaldism (6)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 28.62 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 356.52 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -42.7074-0.577 Picture PostScript Text
3' UTR -1749.006413-0.273 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018444 - Dil_domain
IPR002710 - Dilute
IPR000048 - IQ_motif_EF-hand-BS
IPR001609 - Myosin_head_motor_dom

Pfam Domains:
PF00063 - Myosin head (motor domain)
PF00612 - IQ calmodulin-binding motif
PF01843 - DIL domain

SCOP Domains:
81382 - Skp1 dimerisation domain-like
50084 - Myosin S1 fragment, N-terminal domain
52540 - P-loop containing nucleoside triphosphate hydrolases
58042 - Outer membrane lipoprotein

ModBase Predicted Comparative 3D Structure on Q9Y4I1
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000146 microfilament motor activity
GO:0000166 nucleotide binding
GO:0003723 RNA binding
GO:0003774 motor activity
GO:0003777 microtubule motor activity
GO:0003779 actin binding
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0005516 calmodulin binding
GO:0005524 ATP binding
GO:0008017 microtubule binding
GO:0017137 Rab GTPase binding
GO:0042802 identical protein binding
GO:0051015 actin filament binding
GO:0097718 disordered domain specific binding

Biological Process:
GO:0006582 melanin metabolic process
GO:0006887 exocytosis
GO:0006892 post-Golgi vesicle-mediated transport
GO:0007018 microtubule-based movement
GO:0007268 chemical synaptic transmission
GO:0007601 visual perception
GO:0015031 protein transport
GO:0016192 vesicle-mediated transport
GO:0030048 actin filament-based movement
GO:0030050 vesicle transport along actin filament
GO:0030073 insulin secretion
GO:0030318 melanocyte differentiation
GO:0031585 regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
GO:0031987 locomotion involved in locomotory behavior
GO:0032252 secretory granule localization
GO:0032400 melanosome localization
GO:0032402 melanosome transport
GO:0032869 cellular response to insulin stimulus
GO:0042438 melanin biosynthetic process
GO:0042476 odontogenesis
GO:0042552 myelination
GO:0042759 long-chain fatty acid biosynthetic process
GO:0043473 pigmentation
GO:0048066 developmental pigmentation
GO:0048820 hair follicle maturation
GO:0050808 synapse organization
GO:0051643 endoplasmic reticulum localization
GO:0072659 protein localization to plasma membrane
GO:0099089 establishment of endoplasmic reticulum localization to postsynapse
GO:1903358 regulation of Golgi organization

Cellular Component:
GO:0001726 ruffle
GO:0001750 photoreceptor outer segment
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0005882 intermediate filament
GO:0016020 membrane
GO:0016459 myosin complex
GO:0016461 unconventional myosin complex
GO:0030141 secretory granule
GO:0030426 growth cone
GO:0032433 filopodium tip
GO:0032593 insulin-responsive compartment
GO:0035371 microtubule plus-end
GO:0042470 melanosome
GO:0042641 actomyosin
GO:0043005 neuron projection
GO:0043025 neuronal cell body
GO:0070062 extracellular exosome
GO:0005764 lysosome
GO:0005769 early endosome
GO:0005770 late endosome
GO:0005777 peroxisome
GO:0005783 endoplasmic reticulum
GO:0005884 actin filament
GO:0031982 vesicle
GO:0055037 recycling endosome


-  Descriptions from all associated GenBank mRNAs
  AB209505 - Homo sapiens mRNA for Myosin Va variant protein.
AB290180 - Homo sapiens mRNA for MYO5A variant protein, complete cds.
AB209487 - Homo sapiens mRNA for Myosin Va variant protein.
U90942 - Human myosin heavy chain 12 (MYO5A) mRNA, complete cds.
Y07759 - H.sapiens mRNA for myosin heavy chain 12.
BC156392 - Synthetic construct Homo sapiens clone IMAGE:100062004, MGC:190139 myosin VA (heavy chain 12, myoxin) (MYO5A) mRNA, encodes complete protein.
BC172485 - Synthetic construct Homo sapiens clone IMAGE:100069179, MGC:199190 myosin VA (heavy chain 12, myoxin) (MYO5A) mRNA, encodes complete protein.
AK303660 - Homo sapiens cDNA FLJ50342 partial cds, highly similar to Myosin-5A.
AK307600 - Homo sapiens cDNA, FLJ97548.
AK090859 - Homo sapiens cDNA FLJ33540 fis, clone BRAMY2007613.
AX746652 - Sequence 177 from Patent EP1308459.
AK124898 - Homo sapiens cDNA FLJ42908 fis, clone BRHIP3018797.
JD504109 - Sequence 485133 from Patent EP1572962.
JD488973 - Sequence 469997 from Patent EP1572962.
JD509255 - Sequence 490279 from Patent EP1572962.
JD307861 - Sequence 288885 from Patent EP1572962.
JD349803 - Sequence 330827 from Patent EP1572962.
JD063315 - Sequence 44339 from Patent EP1572962.
JD442710 - Sequence 423734 from Patent EP1572962.
JD136036 - Sequence 117060 from Patent EP1572962.
JD344938 - Sequence 325962 from Patent EP1572962.
JD348334 - Sequence 329358 from Patent EP1572962.
JD216844 - Sequence 197868 from Patent EP1572962.
JD315712 - Sequence 296736 from Patent EP1572962.
JD414654 - Sequence 395678 from Patent EP1572962.
JD324389 - Sequence 305413 from Patent EP1572962.
JD282511 - Sequence 263535 from Patent EP1572962.
JD279243 - Sequence 260267 from Patent EP1572962.
JD139731 - Sequence 120755 from Patent EP1572962.
JD085340 - Sequence 66364 from Patent EP1572962.
JD254399 - Sequence 235423 from Patent EP1572962.
JD126514 - Sequence 107538 from Patent EP1572962.
JD504128 - Sequence 485152 from Patent EP1572962.
JD273988 - Sequence 255012 from Patent EP1572962.
JD260536 - Sequence 241560 from Patent EP1572962.
JD345168 - Sequence 326192 from Patent EP1572962.
JD173979 - Sequence 155003 from Patent EP1572962.
JD239229 - Sequence 220253 from Patent EP1572962.
JD276890 - Sequence 257914 from Patent EP1572962.
JD434930 - Sequence 415954 from Patent EP1572962.
JD274993 - Sequence 256017 from Patent EP1572962.
JD497019 - Sequence 478043 from Patent EP1572962.
JD211728 - Sequence 192752 from Patent EP1572962.
JD350495 - Sequence 331519 from Patent EP1572962.
JD228396 - Sequence 209420 from Patent EP1572962.
JD552033 - Sequence 533057 from Patent EP1572962.
JD467607 - Sequence 448631 from Patent EP1572962.
JD185583 - Sequence 166607 from Patent EP1572962.
JD327972 - Sequence 308996 from Patent EP1572962.
JD073843 - Sequence 54867 from Patent EP1572962.
JD449622 - Sequence 430646 from Patent EP1572962.
JD317904 - Sequence 298928 from Patent EP1572962.
JD083516 - Sequence 64540 from Patent EP1572962.
JD182157 - Sequence 163181 from Patent EP1572962.
JD525291 - Sequence 506315 from Patent EP1572962.
JD100837 - Sequence 81861 from Patent EP1572962.
EU921839 - Homo sapiens myosin Va mRNA, exons A, C, E, and partial cds, alternatively spliced.
S74799 - MYH12=myosin heavy chain 12 [human, brain, mRNA Partial, 1235 nt].
Z22957 - H.sapiens myosin I homologue.
AF055459 - Homo sapiens myosin Va (MYR12) mRNA, alternatively spliced, partial cds.
AF090424 - Homo sapiens alternatively spliced myosin V mRNA, partial cds.
AF090425 - Homo sapiens alternatively spliced myosin V mRNA, partial cds.
AF090427 - Homo sapiens alternatively spliced myosin V mRNA, partial cds.
AF090426 - Homo sapiens alternatively spliced myosin V mRNA, partial cds.
AF090428 - Homo sapiens alternatively spliced myosin V mRNA, partial cds.
AK057146 - Homo sapiens cDNA FLJ32584 fis, clone SPLEN2000350.
JD128358 - Sequence 109382 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9Y4I1 (Reactome details) participates in the following event(s):

R-HSA-1449597 p-AKT2 phosphorylates Myosin 5A
R-HSA-1445148 Translocation of GLUT4 to the plasma membrane
R-HSA-2029482 Regulation of actin dynamics for phagocytic cup formation
R-HSA-199991 Membrane Trafficking
R-HSA-264876 Insulin processing
R-HSA-2029480 Fcgamma receptor (FCGR) dependent phagocytosis
R-HSA-5653656 Vesicle-mediated transport
R-HSA-2980736 Peptide hormone metabolism
R-HSA-168249 Innate Immune System
R-HSA-392499 Metabolism of proteins
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A8MZC5, ENST00000399233.1, ENST00000399233.2, ENST00000399233.3, ENST00000399233.4, ENST00000399233.5, ENST00000399233.6, MYH12, MYO5A_HUMAN, NM_001382348, O60653, Q07902, Q16249, Q9UE30, Q9UE31, Q9Y4I1, uc319afl.1, uc319afl.2
UCSC ID: ENST00000399233.7_12
RefSeq Accession: NM_001382347.1
Protein: Q9Y4I1 (aka MYO5A_HUMAN or MY5A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.