Human Gene NAPA (ENST00000263354.8_7) from GENCODE V47lift37
  Description: NSF attachment protein alpha, transcript variant 2 (from RefSeq NR_038456.2)
Gencode Transcript: ENST00000263354.8_7
Gencode Gene: ENSG00000105402.8_12
Transcript (Including UTRs)
   Position: hg19 chr19:47,990,894-48,018,320 Size: 27,427 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg19 chr19:47,991,545-48,018,197 Size: 26,653 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:47,990,894-48,018,320)mRNA (may differ from genome)Protein (295 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SNAA_HUMAN
DESCRIPTION: RecName: Full=Alpha-soluble NSF attachment protein; Short=SNAP-alpha; AltName: Full=N-ethylmaleimide-sensitive factor attachment protein alpha;
FUNCTION: Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.
SUBUNIT: Interacts with PRKCABP, and disrupts the interaction between GRIA2 and PRKCABP, leading to the internalization of GRIA2. Found in a complex with VAMP8 (By similarity). Component of a SNARE-like complex that contains at least ZW10, USE1L, RINT1, STX18 and NAPA/SNAP-alpha. Interacts with VTI1A. Interacts with STX12 (By similarity).
INTERACTION: O00161:SNAP23; NbExp=2; IntAct=EBI-749652, EBI-745000; Q12846:STX4; NbExp=2; IntAct=EBI-749652, EBI-744942;
SUBCELLULAR LOCATION: Membrane; Peripheral membrane protein.
SIMILARITY: Belongs to the SNAP family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 93.77 RPKM in Brain - Cerebellum
Total median expression: 2182.49 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -49.70123-0.404 Picture PostScript Text
3' UTR -255.70651-0.393 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000744 - NSF_attach
IPR011990 - TPR-like_helical

Pfam Domains:
PF02071 - Aromatic-di-Alanine (AdAR) repeat
PF14938 - Soluble NSF attachment protein, SNAP

SCOP Domains:
81901 - HCP-like
48452 - TPR-like

ModBase Predicted Comparative 3D Structure on P54920
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000149 SNARE binding
GO:0005483 soluble NSF attachment protein activity
GO:0005515 protein binding
GO:0019905 syntaxin binding
GO:0044877 macromolecular complex binding

Biological Process:
GO:0006886 intracellular protein transport
GO:0006888 ER to Golgi vesicle-mediated transport
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER
GO:0006891 intra-Golgi vesicle-mediated transport
GO:0007420 brain development
GO:0010807 regulation of synaptic vesicle priming
GO:0015031 protein transport
GO:0016192 vesicle-mediated transport
GO:0030182 neuron differentiation
GO:0032781 positive regulation of ATPase activity
GO:0032984 macromolecular complex disassembly
GO:0035249 synaptic transmission, glutamatergic
GO:0035494 SNARE complex disassembly
GO:0045176 apical protein localization
GO:0048208 COPII vesicle coating
GO:0061025 membrane fusion

Cellular Component:
GO:0000139 Golgi membrane
GO:0005774 vacuolar membrane
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0031201 SNARE complex
GO:0043209 myelin sheath
GO:0070044 synaptobrevin 2-SNAP-25-syntaxin-1a complex
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  LF207523 - JP 2014500723-A/15026: Polycomb-Associated Non-Coding RNAs.
BC007432 - Homo sapiens N-ethylmaleimide-sensitive factor attachment protein, alpha, mRNA (cDNA clone MGC:4020 IMAGE:2962847), complete cds.
BC001165 - Homo sapiens N-ethylmaleimide-sensitive factor attachment protein, alpha, mRNA (cDNA clone MGC:1700 IMAGE:3533668), complete cds.
BC091511 - Homo sapiens N-ethylmaleimide-sensitive factor attachment protein, alpha, mRNA (cDNA clone MGC:111234 IMAGE:30512911), complete cds.
BC028234 - Homo sapiens N-ethylmaleimide-sensitive factor attachment protein, alpha, mRNA (cDNA clone MGC:40092 IMAGE:5245770), complete cds.
AK123456 - Homo sapiens cDNA FLJ41462 fis, clone BRSTN2016470.
AK126519 - Homo sapiens cDNA FLJ44555 fis, clone UTERU3007640.
AK098401 - Homo sapiens cDNA FLJ25535 fis, clone CBR08603, highly similar to ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN.
U39412 - Homo sapiens alpha SNAP mRNA, complete cds.
JD383438 - Sequence 364462 from Patent EP1572962.
JD290059 - Sequence 271083 from Patent EP1572962.
JD482465 - Sequence 463489 from Patent EP1572962.
JD158072 - Sequence 139096 from Patent EP1572962.
JD393351 - Sequence 374375 from Patent EP1572962.
JD344511 - Sequence 325535 from Patent EP1572962.
JD374497 - Sequence 355521 from Patent EP1572962.
JD471079 - Sequence 452103 from Patent EP1572962.
JD112619 - Sequence 93643 from Patent EP1572962.
LF366862 - JP 2014500723-A/174365: Polycomb-Associated Non-Coding RNAs.
LF366861 - JP 2014500723-A/174364: Polycomb-Associated Non-Coding RNAs.
AK292244 - Homo sapiens cDNA FLJ78349 complete cds, highly similar to Homo sapiens N-ethylmaleimide-sensitive factor attachment protein, alpha (NAPA), mRNA.
BT019568 - Homo sapiens N-ethylmaleimide-sensitive factor attachment protein, alpha mRNA, complete cds.
KJ892620 - Synthetic construct Homo sapiens clone ccsbBroadEn_02014 NAPA gene, encodes complete protein.
LF366858 - JP 2014500723-A/174361: Polycomb-Associated Non-Coding RNAs.
AK310114 - Homo sapiens cDNA, FLJ17156.
AK308633 - Homo sapiens cDNA, FLJ98674.
LF366856 - JP 2014500723-A/174359: Polycomb-Associated Non-Coding RNAs.
JD021511 - Sequence 2535 from Patent EP1572962.
JD029085 - Sequence 10109 from Patent EP1572962.
AK310185 - Homo sapiens cDNA, FLJ17227.
AY927608 - Homo sapiens mRNA sequence.
AY927609 - Homo sapiens mRNA sequence.
JD272382 - Sequence 253406 from Patent EP1572962.
MA602439 - JP 2018138019-A/174365: Polycomb-Associated Non-Coding RNAs.
MA602438 - JP 2018138019-A/174364: Polycomb-Associated Non-Coding RNAs.
MA602435 - JP 2018138019-A/174361: Polycomb-Associated Non-Coding RNAs.
MA602433 - JP 2018138019-A/174359: Polycomb-Associated Non-Coding RNAs.
MA443100 - JP 2018138019-A/15026: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P54920 (Reactome details) participates in the following event(s):

R-HSA-429815 Formation Of Bloc-1 Complex
R-HSA-5694423 NSF and SNAPs bind cis-SNARE complex
R-HSA-6809014 cis-Golgi cis-SNARE binds NSF and SNAPs
R-HSA-6811425 NSF and SNAPs bind cis-SNARE at the ER membrane
R-HSA-6814676 SNAPs and NSF hexamer bind cis-SNARE at the TGN
R-HSA-6814684 cis-SNARE binds SNAPs and NSF hexamer at the TGN
R-HSA-8847637 NSF and SNAPs bind the cis-SNARE at the Golgi
R-HSA-5694425 NSF ATPase activity dissociates cis-SNARE
R-HSA-6811422 NSF ATPase activity dissociates cis-SNARE at the ER
R-HSA-6814678 ATP hydrolysis by NSF disassembles the cis-SNARE at the TGN
R-HSA-6814683 NSF-dependent ATP hydrolysis disassembles the cis-SNARE at the TGN
R-HSA-8847638 ATP hydrolysis by NSF disassembles the cis-SNARE at the Golgi membrane
R-HSA-432722 Golgi Associated Vesicle Biogenesis
R-HSA-204005 COPII-mediated vesicle transport
R-HSA-6807878 COPI-mediated anterograde transport
R-HSA-6811434 COPI-dependent Golgi-to-ER retrograde traffic
R-HSA-6811440 Retrograde transport at the Trans-Golgi-Network
R-HSA-6811438 Intra-Golgi traffic
R-HSA-421837 Clathrin derived vesicle budding
R-HSA-199977 ER to Golgi Anterograde Transport
R-HSA-8856688 Golgi-to-ER retrograde transport
R-HSA-6811442 Intra-Golgi and retrograde Golgi-to-ER traffic
R-HSA-199992 trans-Golgi Network Vesicle Budding
R-HSA-199991 Membrane Trafficking
R-HSA-948021 Transport to the Golgi and subsequent modification
R-HSA-5653656 Vesicle-mediated transport
R-HSA-446203 Asparagine N-linked glycosylation
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: A8K879, ENST00000263354.1, ENST00000263354.2, ENST00000263354.3, ENST00000263354.4, ENST00000263354.5, ENST00000263354.6, ENST00000263354.7, NR_038456, P54920, Q96IK3, Q9BVJ3, SNAA_HUMAN, SNAPA, uc317hiz.1, uc317hiz.2
UCSC ID: ENST00000263354.8_7
RefSeq Accession: NM_003827.4
Protein: P54920 (aka SNAA_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.