Human Gene NCOA3 (ENST00000371998.8_7) from GENCODE V47lift37
  Description: nuclear receptor coactivator 3, transcript variant 1 (from RefSeq NM_181659.3)
Gencode Transcript: ENST00000371998.8_7
Gencode Gene: ENSG00000124151.19_11
Transcript (Including UTRs)
   Position: hg19 chr20:46,130,631-46,285,616 Size: 154,986 Total Exon Count: 23 Strand: +
Coding Region
   Position: hg19 chr20:46,250,992-46,282,161 Size: 31,170 Coding Exon Count: 21 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:46,130,631-46,285,616)mRNA (may differ from genome)Protein (1424 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: NCOA3_HUMAN
DESCRIPTION: RecName: Full=Nuclear receptor coactivator 3; Short=NCoA-3; EC=2.3.1.48; AltName: Full=ACTR; AltName: Full=Amplified in breast cancer 1 protein; Short=AIB-1; AltName: Full=CBP-interacting protein; Short=pCIP; AltName: Full=Class E basic helix-loop-helix protein 42; Short=bHLHe42; AltName: Full=Receptor-associated coactivator 3; Short=RAC-3; AltName: Full=Steroid receptor coactivator protein 3; Short=SRC-3; AltName: Full=Thyroid hormone receptor activator molecule 1; Short=TRAM-1;
FUNCTION: Nuclear receptor coactivator that directly binds nuclear receptors and stimulates the transcriptional activities in a hormone-dependent fashion. Plays a central role in creating a multisubunit coactivator complex, which probably acts via remodeling of chromatin. Involved in the coactivation of different nuclear receptors, such as for steroids (GR and ER), retinoids (RARs and RXRs), thyroid hormone (TRs), vitamin D3 (VDR) and prostanoids (PPARs). Displays histone acetyltransferase activity. Also involved in the coactivation of the NF-kappa-B pathway via its interaction with the NFKB1 subunit. Interacts with PSMB9.
CATALYTIC ACTIVITY: Acetyl-CoA + [histone] = CoA + acetyl- [histone].
ENZYME REGULATION: Coactivator activity on nuclear receptors and NF-kappa-B pathways is enhanced by various hormones, and the TNF cytokine, respectively. TNF stimulation probably enhances phosphorylation, which in turn activates coactivator function. In contrast, acetylation by CREBBP apparently suppresses coactivation of target genes by disrupting its association with nuclear receptors. Binds to CSNK1D.
SUBUNIT: Interacts with CARM1 (By similarity). Present in a complex containing NCOA2, IKKA, IKKB, IKBKG and the histone acetyltransferase protein CREBBP. Interacts with CASP8AP2, NR3C1 and PCAF. Interacts with ATAD2 and this interaction is enhanced by estradiol. Found in a complex containing NCOA3, AR and MAK. Interacts with DDX5.
INTERACTION: Q92841:DDX17; NbExp=2; IntAct=EBI-81196, EBI-746012; P03372:ESR1; NbExp=2; IntAct=EBI-81196, EBI-78473; O14920:IKBKB; NbExp=3; IntAct=EBI-81196, EBI-81266; P61289:PSME3; NbExp=5; IntAct=EBI-81196, EBI-355546; O43791:SPOP; NbExp=6; IntAct=EBI-81196, EBI-743549;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=Mainly cytoplasmic and weakly nuclear. Upon TNF activation and subsequent phosphorylation, it translocates from the cytoplasm to the nucleus.
TISSUE SPECIFICITY: Widely expressed. High expression in heart, skeletal muscle, pancreas and placenta. Low expression in brain, and very low in lung, liver and kidney.
DOMAIN: Contains three Leu-Xaa-Xaa-Leu-Leu (LXXLL) motifs. Motifs 1 and 2 are essential for the association with nuclear receptors, and constitute the RID domain (Receptor-interacting domain).
PTM: Acetylated by CREBBP. Acetylation occurs in the RID domain, and disrupts the interaction with nuclear receptors and regulates its function.
PTM: Methylated by CARM1 (By similarity).
PTM: Phosphorylated by IKK complex. Regulated its function. Phosphorylation at Ser-601 by CK1 promotes coactivator function.
POLYMORPHISM: The length of the poly-Gln region is polymorphic in the normal population.
MISCELLANEOUS: NCOA3 is frequently amplified or overexpressed in breast and ovarian cancers.
SIMILARITY: Belongs to the SRC/p160 nuclear receptor coactivator family.
SIMILARITY: Contains 1 bHLH (basic helix-loop-helix) domain.
SIMILARITY: Contains 1 PAS (PER-ARNT-SIM) domain.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/NCOA3ID505ch20q13.html";
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/ncoa3/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NCOA3
Diseases sorted by gene-association score: breast cancer (14), estrogen-receptor positive breast cancer (8), meningothelial meningioma (6), endometrial cancer (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 37.87 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 245.84 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -89.00231-0.385 Picture PostScript Text
3' UTR -885.403455-0.256 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR010011 - DUF1518
IPR011598 - HLH_dom
IPR009110 - Nuc_rcpt_coact
IPR014920 - Nuc_rcpt_coact_Ncoa-typ
IPR017426 - Nuclear_rcpt_coactivator
IPR000014 - PAS
IPR013767 - PAS_fold
IPR014935 - SRC-1
IPR008955 - Src1_rcpt_coact

Pfam Domains:
PF00989 - PAS fold
PF07469 - Domain of unknown function (DUF1518)
PF08815 - Nuclear receptor coactivator
PF08832 - Steroid receptor coactivator
PF13426 - PAS domain
PF14598 - PAS domain
PF16279 - Domain of unknown function (DUF4927)
PF16665 - Unstructured region on nuclear receptor coactivator protein

SCOP Domains:
69125 - Nuclear receptor coactivator interlocking domain
47459 - HLH, helix-loop-helix DNA-binding domain
55785 - PYP-like sensor domain (PAS domain)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1KBH - NMR MuPIT 3L3X - X-ray MuPIT 3L3Z - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9Y6Q9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000993 RNA polymerase II core binding
GO:0003713 transcription coactivator activity
GO:0004402 histone acetyltransferase activity
GO:0005515 protein binding
GO:0016740 transferase activity
GO:0016746 transferase activity, transferring acyl groups
GO:0016922 ligand-dependent nuclear receptor binding
GO:0030374 ligand-dependent nuclear receptor transcription coactivator activity
GO:0035257 nuclear hormone receptor binding
GO:0046966 thyroid hormone receptor binding
GO:0046982 protein heterodimerization activity
GO:0046983 protein dimerization activity
GO:0047485 protein N-terminus binding
GO:0050681 androgen receptor binding
GO:0097718 disordered domain specific binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0010628 positive regulation of gene expression
GO:0016573 histone acetylation
GO:0030521 androgen receptor signaling pathway
GO:0030522 intracellular receptor signaling pathway
GO:0032870 cellular response to hormone stimulus
GO:0035624 receptor transactivation
GO:0043697 cell dedifferentiation
GO:0045618 positive regulation of keratinocyte differentiation
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0071392 cellular response to estradiol stimulus
GO:1902459 positive regulation of stem cell population maintenance
GO:2000035 regulation of stem cell division
GO:2001141 regulation of RNA biosynthetic process

Cellular Component:
GO:0000790 nuclear chromatin
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0032991 macromolecular complex
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  U80737 - Homo sapiens CAGH16 mRNA, complete cds.
BC092516 - Homo sapiens nuclear receptor coactivator 3, mRNA (cDNA clone MGC:104986 IMAGE:3064877), complete cds.
AK308346 - Homo sapiens cDNA, FLJ98294.
AK289683 - Homo sapiens cDNA FLJ77005 complete cds, highly similar to Homo sapiens nuclear receptor coactivator 3 (NCOA3), transcript variant 1, mRNA.
AF012108 - Homo sapiens Amplified in Breast Cancer (AIB1) mRNA, complete cds.
AB209863 - Homo sapiens mRNA for nuclear receptor coactivator 3 isoform a variant protein.
AF016031 - Homo sapiens thyroid hormone receptor activator molecule (TRAM-1) mRNA, complete cds.
AF036892 - Homo sapiens nuclear receptor coactivator (ACTR) mRNA, complete cds.
BC119001 - Homo sapiens nuclear receptor coactivator 3, mRNA (cDNA clone MGC:141849 IMAGE:40083362), complete cds.
BC122547 - Homo sapiens nuclear receptor coactivator 3, mRNA (cDNA clone MGC:141848 IMAGE:40083361), complete cds.
AF010227 - Homo sapiens receptor-associated coactivator 3 (RAC3) mRNA, complete cds.
KJ892475 - Synthetic construct Homo sapiens clone ccsbBroadEn_01869 NCOA3 gene, encodes complete protein.
KJ904597 - Synthetic construct Homo sapiens clone ccsbBroadEn_13991 NCOA3-like gene, encodes complete protein.
AB385115 - Synthetic construct DNA, clone: pF1KB5528, Homo sapiens NCOA3 gene for nuclear receptor coactivator 3, complete cds, without stop codon, in Flexi system.
AK302595 - Homo sapiens cDNA FLJ53590 complete cds, highly similar to Nuclear receptor coactivator 3 (EC 2.3.1.48).
BC036778 - Homo sapiens, clone IMAGE:5755782, mRNA.
AK302588 - Homo sapiens cDNA FLJ52175 complete cds, highly similar to Nuclear receptor coactivator 3 (EC 2.3.1.48).
AK296810 - Homo sapiens cDNA FLJ51630 complete cds, highly similar to Nuclear receptor coactivator 3 (EC 2.3.1.48).
JD279789 - Sequence 260813 from Patent EP1572962.
JD432800 - Sequence 413824 from Patent EP1572962.
JD527648 - Sequence 508672 from Patent EP1572962.
JD530535 - Sequence 511559 from Patent EP1572962.
JD357762 - Sequence 338786 from Patent EP1572962.
JD112712 - Sequence 93736 from Patent EP1572962.
JD090148 - Sequence 71172 from Patent EP1572962.
JD326372 - Sequence 307396 from Patent EP1572962.
JD287368 - Sequence 268392 from Patent EP1572962.
JD328497 - Sequence 309521 from Patent EP1572962.
JD091595 - Sequence 72619 from Patent EP1572962.
JD556741 - Sequence 537765 from Patent EP1572962.
JD330880 - Sequence 311904 from Patent EP1572962.
JD314990 - Sequence 296014 from Patent EP1572962.
JD374819 - Sequence 355843 from Patent EP1572962.
JD563304 - Sequence 544328 from Patent EP1572962.
JD390582 - Sequence 371606 from Patent EP1572962.
JD315339 - Sequence 296363 from Patent EP1572962.
JD221195 - Sequence 202219 from Patent EP1572962.
JD369026 - Sequence 350050 from Patent EP1572962.
JD508481 - Sequence 489505 from Patent EP1572962.
JD145762 - Sequence 126786 from Patent EP1572962.
JD237572 - Sequence 218596 from Patent EP1572962.
JD492771 - Sequence 473795 from Patent EP1572962.
JD287911 - Sequence 268935 from Patent EP1572962.
JD512315 - Sequence 493339 from Patent EP1572962.
JD233424 - Sequence 214448 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9Y6Q9 (Reactome details) participates in the following event(s):

R-HSA-381309 PPARG:RXRA heterodimer binds to fatty acid-like ligands
R-HSA-5687090 p-S MAPK6 phosphorylates NCOA3
R-HSA-9008258 NCOA3 binds ESR1:estrogen:TFGA gene
R-HSA-5687097 p-S857 NCOA3 binds ETV4
R-HSA-9008285 NCOA3 recruits EP300 to ESR1:estrogen:TFGA gene:NCOA3
R-HSA-9023840 HATs and coactivators are recruited to the CTSD gene
R-HSA-5687099 p-S857 NCOA3:ETV4 bind MMP2 and MMP10 promoter
R-HSA-9023860 Histone acetyltransferases are recruited to the TFF1 gene
R-HSA-381340 Transcriptional regulation of white adipocyte differentiation
R-HSA-5617472 Activation of anterior HOX genes in hindbrain development during early embryogenesis
R-HSA-5687128 MAPK6/MAPK4 signaling
R-HSA-9018519 Estrogen-dependent gene expression
R-HSA-1266738 Developmental Biology
R-HSA-5619507 Activation of HOX genes during differentiation
R-HSA-5683057 MAPK family signaling cascades
R-HSA-8939211 ESR-mediated signaling
R-HSA-162582 Signal Transduction
R-HSA-9006931 Signaling by Nuclear Receptors

-  Other Names for This Gene
  Alternate Gene Symbols: A4LAZ5, AIB1, BHLHE42, ENST00000371998.1, ENST00000371998.2, ENST00000371998.3, ENST00000371998.4, ENST00000371998.5, ENST00000371998.6, ENST00000371998.7, NCOA3_HUMAN, NM_181659, Q0VF45, Q5JYD9, Q5JYE0, Q9BR49, Q9UPC9, Q9UPG4, Q9UPG7, Q9Y6Q9, RAC3, TRAM1, uc318jok.1, uc318jok.2
UCSC ID: ENST00000371998.8_7
RefSeq Accession: NM_181659.3
Protein: Q9Y6Q9 (aka NCOA3_HUMAN or NCO3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.