Human Gene NDUFAF3 (ENST00000326925.11_4) from GENCODE V47lift37
  Description: NADH:ubiquinone oxidoreductase complex assembly factor 3, transcript variant 1 (from RefSeq NM_199069.2)
Gencode Transcript: ENST00000326925.11_4
Gencode Gene: ENSG00000178057.15_7
Transcript (Including UTRs)
   Position: hg19 chr3:49,059,554-49,060,928 Size: 1,375 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr3:49,059,578-49,060,605 Size: 1,028 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:49,059,554-49,060,928)mRNA (may differ from genome)Protein (184 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: NDUF3_HUMAN
DESCRIPTION: RecName: Full=NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3;
FUNCTION: Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).
SUBUNIT: Interacts with NDUFAF4, NDUFS2 and NDUFS3.
SUBCELLULAR LOCATION: Nucleus (By similarity). Mitochondrion inner membrane.
DISEASE: Defects in NDUFAF3 are a cause of mitochondrial complex I deficiency (MT-C1D) [MIM:252010]. A disorder of the mitochondrial respiratory chain that causes a wide range of clinical disorders, from lethal neonatal disease to adult-onset neurodegenerative disorders. Phenotypes include macrocephaly with progressive leukodystrophy, non-specific encephalopathy, cardiomyopathy, myopathy, liver disease, Leigh syndrome, Leber hereditary optic neuropathy, and some forms of Parkinson disease.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NDUFAF3
Diseases sorted by gene-association score: mitochondrial complex i deficiency* (549), leigh syndrome* (63), paralytic poliomyelitis (9), parotid disease (6), kabuki syndrome 1 (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 335.81 RPKM in Testis
Total median expression: 2789.53 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -6.6024-0.275 Picture PostScript Text
3' UTR -84.00323-0.260 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007523 - NADH_Ub_cplx-1_asu_assmbl-fac3

Pfam Domains:
PF04430 - Protein of unknown function (DUF498/DUF598)

SCOP Domains:
64076 - MTH938-like

ModBase Predicted Comparative 3D Structure on Q9BU61
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0032981 mitochondrial respiratory chain complex I assembly

Cellular Component:
GO:0005634 nucleus
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  KJ906106 - Synthetic construct Homo sapiens clone ccsbBroadEn_15776 NDUFAF3 gene, encodes complete protein.
JF432596 - Synthetic construct Homo sapiens clone IMAGE:100073833 chromosome 3 open reading frame 60 (C3orf60) gene, encodes complete protein.
BC111004 - Homo sapiens chromosome 3 open reading frame 60, mRNA (cDNA clone MGC:117218 IMAGE:5744973), complete cds.
AL049955 - Homo sapiens mRNA; cDNA DKFZp564J0123 (from clone DKFZp564J0123).
BC002873 - Homo sapiens chromosome 3 open reading frame 60, mRNA (cDNA clone MGC:10527 IMAGE:3945015), complete cds.
JD423469 - Sequence 404493 from Patent EP1572962.
JD264805 - Sequence 245829 from Patent EP1572962.
JD400120 - Sequence 381144 from Patent EP1572962.
JD553014 - Sequence 534038 from Patent EP1572962.
JD093529 - Sequence 74553 from Patent EP1572962.
JD083478 - Sequence 64502 from Patent EP1572962.
JD155279 - Sequence 136303 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9BU61 (Reactome details) participates in the following event(s):

R-HSA-6799203 IP subcomplex binds NDUFAF3, NDUFAF4, TIMMDC1 to form Intermediate 1
R-HSA-6799196 The MCIA complex, NDUFAF2-7 all dissociate from the 980kDa complex, resulting in Complex I
R-HSA-6799178 Intermediate 1 binds HP subcomplex to form Intermediate 2
R-HSA-6799191 Intermediate 2 binds MT-ND1:NDUFAF5:NDUFAF6 to form a 315kDa subcomplex
R-HSA-6799202 The 315kDa subcomplex binds the 370kDa subcomplex to form the 550kDa complex
R-HSA-6799197 ND4, ND5 bind the 550kDa complex to form the 815kDa complex
R-HSA-6799179 Peripheral arm subunits bind the 815kDa complex to form a 980kDa complex
R-HSA-6799198 Complex I biogenesis
R-HSA-611105 Respiratory electron transport
R-HSA-163200 Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.
R-HSA-1428517 The citric acid (TCA) cycle and respiratory electron transport
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: C3orf60, ENST00000326925.1, ENST00000326925.10, ENST00000326925.2, ENST00000326925.3, ENST00000326925.4, ENST00000326925.5, ENST00000326925.6, ENST00000326925.7, ENST00000326925.8, ENST00000326925.9, NDUF3_HUMAN, NM_199069, Q9BU61, uc317see.1, uc317see.2
UCSC ID: ENST00000326925.11_4
RefSeq Accession: NM_199069.2
Protein: Q9BU61 (aka NDUF3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.