Human Gene NDUFS2 (ENST00000676972.1_3) from GENCODE V47lift37
  Description: NADH:ubiquinone oxidoreductase core subunit S2, transcript variant 4 (from RefSeq NM_001377299.1)
Gencode Transcript: ENST00000676972.1_3
Gencode Gene: ENSG00000158864.13_11
Transcript (Including UTRs)
   Position: hg19 chr1:161,172,157-161,184,185 Size: 12,029 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg19 chr1:161,172,176-161,183,983 Size: 11,808 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:161,172,157-161,184,185)mRNA (may differ from genome)Protein (463 aa)
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-  Comments and Description Text from UniProtKB
  ID: NDUS2_HUMAN
DESCRIPTION: RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial; EC=1.6.5.3; EC=1.6.99.3; AltName: Full=Complex I-49kD; Short=CI-49kD; AltName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit; Flags: Precursor;
FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity).
CATALYTIC ACTIVITY: NADH + ubiquinone = NAD(+) + ubiquinol.
CATALYTIC ACTIVITY: NADH + acceptor = NAD(+) + reduced acceptor.
COFACTOR: Binds 1 4Fe-4S cluster.
SUBUNIT: Complex I is composed of 45 different subunits. Component of the iron-sulfur (IP) fragment of the enzyme. Interacts with NDUFAF3.
INTERACTION: O75489:NDUFS3; NbExp=5; IntAct=EBI-1224806, EBI-1224896;
SUBCELLULAR LOCATION: Mitochondrion inner membrane; Peripheral membrane protein; Matrix side.
DISEASE: Defects in NDUFS2 are a cause of mitochondrial complex I deficiency (MT-C1D) [MIM:252010]. A disorder of the mitochondrial respiratory chain that causes a wide range of clinical disorders, from lethal neonatal disease to adult-onset neurodegenerative disorders. Phenotypes include macrocephaly with progressive leukodystrophy, non-specific encephalopathy, cardiomyopathy, myopathy, liver disease, Leigh syndrome, Leber hereditary optic neuropathy, and some forms of Parkinson disease.
SIMILARITY: Belongs to the complex I 49 kDa subunit family.

-  Primer design for this transcript
 

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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NDUFS2
Diseases sorted by gene-association score: mitochondrial complex i deficiency* (783), leigh syndrome with leukodystrophy* (157), leber optic atrophy* (106), leigh syndrome* (66), tricuspid valve prolapse (8), mitochondrial metabolism disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -1.9019-0.100 Picture PostScript Text
3' UTR -51.10202-0.253 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001135 - NADH_Q_OxRdtase_suD
IPR014029 - NADH_UbQ_OxRdtase_49kDa_CS
IPR022885 - NDH1_su_D/H

Pfam Domains:
PF00346 - Respiratory-chain NADH dehydrogenase, 49 Kd subunit

SCOP Domains:
56762 - HydB/Nqo4-like

ModBase Predicted Comparative 3D Structure on O75306
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
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 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003954 NADH dehydrogenase activity
GO:0005515 protein binding
GO:0008137 NADH dehydrogenase (ubiquinone) activity
GO:0009055 electron carrier activity
GO:0016491 oxidoreductase activity
GO:0016651 oxidoreductase activity, acting on NAD(P)H
GO:0031625 ubiquitin protein ligase binding
GO:0046872 metal ion binding
GO:0048038 quinone binding
GO:0051287 NAD binding
GO:0051536 iron-sulfur cluster binding
GO:0051539 4 iron, 4 sulfur cluster binding

Biological Process:
GO:0006120 mitochondrial electron transport, NADH to ubiquinone
GO:0006979 response to oxidative stress
GO:0032981 mitochondrial respiratory chain complex I assembly
GO:0042775 mitochondrial ATP synthesis coupled electron transport
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005654 nucleoplasm
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005747 mitochondrial respiratory chain complex I
GO:0005759 mitochondrial matrix
GO:0016020 membrane
GO:0070469 respiratory chain


-  Descriptions from all associated GenBank mRNAs
  BC008868 - Homo sapiens NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase), mRNA (cDNA clone MGC:15322 IMAGE:4131430), complete cds.
AK301641 - Homo sapiens cDNA FLJ53932 complete cds, highly similar to NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial precursor (EC 1.6.5.3).
AK315977 - Homo sapiens cDNA, FLJ78876 complete cds, highly similar to NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial precursor (EC 1.6.5.3).
AK314807 - Homo sapiens cDNA, FLJ95682.
BC000170 - Homo sapiens NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase), mRNA (cDNA clone MGC:5127 IMAGE:2899956), complete cds.
AF013160 - Homo sapiens NADH dehydrogenase-ubiquinone Fe-S protein 2 precursor mRNA, nuclear gene encoding mitochondrial protein, complete cds.
AF050640 - Homo sapiens NADH-ubiquinone oxidoreductase NDUFS2 subunit mRNA, nuclear gene encoding mitochondrial protein, complete cds.
AK222618 - Homo sapiens mRNA for NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) variant, clone: CBL00455.
AK309871 - Homo sapiens cDNA, FLJ99912.
BC001456 - Homo sapiens NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase), mRNA (cDNA clone MGC:1957 IMAGE:3138814), complete cds.
DQ894087 - Synthetic construct Homo sapiens clone IMAGE:100008547; FLH167560.01L; RZPDo839C0589D NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) (NDUFS2) gene, encodes complete protein.
Z36812 - H.sapiens (xs16) mRNA, 372bp.
JD024082 - Sequence 5106 from Patent EP1572962.
JD031550 - Sequence 12574 from Patent EP1572962.
JD507745 - Sequence 488769 from Patent EP1572962.
JD201212 - Sequence 182236 from Patent EP1572962.
JD165099 - Sequence 146123 from Patent EP1572962.
JD291247 - Sequence 272271 from Patent EP1572962.
JD280242 - Sequence 261266 from Patent EP1572962.
JD101638 - Sequence 82662 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-3781 - aerobic respiration I (cytochrome c)

Reactome (by CSHL, EBI, and GO)

Protein O75306 (Reactome details) participates in the following event(s):

R-HSA-6800868 NDUF subunits bind to form the IP subcomplex
R-HSA-6799203 IP subcomplex binds NDUFAF3, NDUFAF4, TIMMDC1 to form Intermediate 1
R-HSA-6799178 Intermediate 1 binds HP subcomplex to form Intermediate 2
R-HSA-6799191 Intermediate 2 binds MT-ND1:NDUFAF5:NDUFAF6 to form a 315kDa subcomplex
R-HSA-6799202 The 315kDa subcomplex binds the 370kDa subcomplex to form the 550kDa complex
R-HSA-6799197 ND4, ND5 bind the 550kDa complex to form the 815kDa complex
R-HSA-6799196 The MCIA complex, NDUFAF2-7 all dissociate from the 980kDa complex, resulting in Complex I
R-HSA-6799179 Peripheral arm subunits bind the 815kDa complex to form a 980kDa complex
R-HSA-163217 Complex I oxidises NADH to NAD+, reduces CoQ to QH2
R-HSA-6799198 Complex I biogenesis
R-HSA-611105 Respiratory electron transport
R-HSA-163200 Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.
R-HSA-1428517 The citric acid (TCA) cycle and respiratory electron transport
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: D3DVG7, J3KPM7, NDUS2_HUMAN, NM_001377299, O75306, Q5VTW0, Q969P3, Q9UEV3, uc330bxw.1, uc330bxw.2
UCSC ID: ENST00000676972.1_3
RefSeq Accession: NM_001377299.1
Protein: O75306 (aka NDUS2_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene NDUFS2:
leigh-nucl-ov (Nuclear Gene-Encoded Leigh Syndrome Spectrum Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.