Human Gene NDUFS2 (ENST00000676972.1_3) from GENCODE V47lift37
  Description: NADH:ubiquinone oxidoreductase core subunit S2, transcript variant 4 (from RefSeq NM_001377299.1)
Gencode Transcript: ENST00000676972.1_3
Gencode Gene: ENSG00000158864.13_11
Transcript (Including UTRs)
   Position: hg19 chr1:161,172,157-161,184,185 Size: 12,029 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg19 chr1:161,172,176-161,183,983 Size: 11,808 Coding Exon Count: 14 

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Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:161,172,157-161,184,185)mRNA (may differ from genome)Protein (463 aa)
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-  Comments and Description Text from UniProtKB
  ID: NDUS2_HUMAN
DESCRIPTION: RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial; EC=1.6.5.3; EC=1.6.99.3; AltName: Full=Complex I-49kD; Short=CI-49kD; AltName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit; Flags: Precursor;
FUNCTION: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity).
CATALYTIC ACTIVITY: NADH + ubiquinone = NAD(+) + ubiquinol.
CATALYTIC ACTIVITY: NADH + acceptor = NAD(+) + reduced acceptor.
COFACTOR: Binds 1 4Fe-4S cluster.
SUBUNIT: Complex I is composed of 45 different subunits. Component of the iron-sulfur (IP) fragment of the enzyme. Interacts with NDUFAF3.
INTERACTION: O75489:NDUFS3; NbExp=5; IntAct=EBI-1224806, EBI-1224896;
SUBCELLULAR LOCATION: Mitochondrion inner membrane; Peripheral membrane protein; Matrix side.
DISEASE: Defects in NDUFS2 are a cause of mitochondrial complex I deficiency (MT-C1D) [MIM:252010]. A disorder of the mitochondrial respiratory chain that causes a wide range of clinical disorders, from lethal neonatal disease to adult-onset neurodegenerative disorders. Phenotypes include macrocephaly with progressive leukodystrophy, non-specific encephalopathy, cardiomyopathy, myopathy, liver disease, Leigh syndrome, Leber hereditary optic neuropathy, and some forms of Parkinson disease.
SIMILARITY: Belongs to the complex I 49 kDa subunit family.

-  Primer design for this transcript
 

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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NDUFS2
Diseases sorted by gene-association score: mitochondrial complex i deficiency* (783), leigh syndrome with leukodystrophy* (157), leber optic atrophy* (106), leigh syndrome* (66), tricuspid valve prolapse (8), mitochondrial metabolism disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -1.9019-0.100 Picture PostScript Text
3' UTR -51.10202-0.253 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001135 - NADH_Q_OxRdtase_suD
IPR014029 - NADH_UbQ_OxRdtase_49kDa_CS
IPR022885 - NDH1_su_D/H

Pfam Domains:
PF00346 - Respiratory-chain NADH dehydrogenase, 49 Kd subunit

SCOP Domains:
56762 - HydB/Nqo4-like

ModBase Predicted Comparative 3D Structure on O75306
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
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    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003954 NADH dehydrogenase activity
GO:0005515 protein binding
GO:0008137 NADH dehydrogenase (ubiquinone) activity
GO:0009055 electron carrier activity
GO:0016491 oxidoreductase activity
GO:0016651 oxidoreductase activity, acting on NAD(P)H
GO:0031625 ubiquitin protein ligase binding
GO:0046872 metal ion binding
GO:0048038 quinone binding
GO:0051287 NAD binding
GO:0051536 iron-sulfur cluster binding
GO:0051539 4 iron, 4 sulfur cluster binding

Biological Process:
GO:0006120 mitochondrial electron transport, NADH to ubiquinone
GO:0006979 response to oxidative stress
GO:0032981 mitochondrial respiratory chain complex I assembly
GO:0042775 mitochondrial ATP synthesis coupled electron transport
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005654 nucleoplasm
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005747 mitochondrial respiratory chain complex I
GO:0005759 mitochondrial matrix
GO:0016020 membrane
GO:0070469 respiratory chain


-  Descriptions from all associated GenBank mRNAs
  BC008868 - Homo sapiens NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase), mRNA (cDNA clone MGC:15322 IMAGE:4131430), complete cds.
AK301641 - Homo sapiens cDNA FLJ53932 complete cds, highly similar to NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial precursor (EC 1.6.5.3).
AK315977 - Homo sapiens cDNA, FLJ78876 complete cds, highly similar to NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial precursor (EC 1.6.5.3).
AK314807 - Homo sapiens cDNA, FLJ95682.
BC000170 - Homo sapiens NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase), mRNA (cDNA clone MGC:5127 IMAGE:2899956), complete cds.
AF013160 - Homo sapiens NADH dehydrogenase-ubiquinone Fe-S protein 2 precursor mRNA, nuclear gene encoding mitochondrial protein, complete cds.
AF050640 - Homo sapiens NADH-ubiquinone oxidoreductase NDUFS2 subunit mRNA, nuclear gene encoding mitochondrial protein, complete cds.
AK222618 - Homo sapiens mRNA for NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) variant, clone: CBL00455.
AK309871 - Homo sapiens cDNA, FLJ99912.
BC001456 - Homo sapiens NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase), mRNA (cDNA clone MGC:1957 IMAGE:3138814), complete cds.
DQ894087 - Synthetic construct Homo sapiens clone IMAGE:100008547; FLH167560.01L; RZPDo839C0589D NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) (NDUFS2) gene, encodes complete protein.
Z36812 - H.sapiens (xs16) mRNA, 372bp.
JD024082 - Sequence 5106 from Patent EP1572962.
JD031550 - Sequence 12574 from Patent EP1572962.
JD507745 - Sequence 488769 from Patent EP1572962.
JD201212 - Sequence 182236 from Patent EP1572962.
JD165099 - Sequence 146123 from Patent EP1572962.
JD291247 - Sequence 272271 from Patent EP1572962.
JD280242 - Sequence 261266 from Patent EP1572962.
JD101638 - Sequence 82662 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-3781 - aerobic respiration I (cytochrome c)

Reactome (by CSHL, EBI, and GO)

Protein O75306 (Reactome details) participates in the following event(s):

R-HSA-6800868 NDUF subunits bind to form the IP subcomplex
R-HSA-6799203 IP subcomplex binds NDUFAF3, NDUFAF4, TIMMDC1 to form Intermediate 1
R-HSA-6799178 Intermediate 1 binds HP subcomplex to form Intermediate 2
R-HSA-6799191 Intermediate 2 binds MT-ND1:NDUFAF5:NDUFAF6 to form a 315kDa subcomplex
R-HSA-6799202 The 315kDa subcomplex binds the 370kDa subcomplex to form the 550kDa complex
R-HSA-6799197 ND4, ND5 bind the 550kDa complex to form the 815kDa complex
R-HSA-6799196 The MCIA complex, NDUFAF2-7 all dissociate from the 980kDa complex, resulting in Complex I
R-HSA-6799179 Peripheral arm subunits bind the 815kDa complex to form a 980kDa complex
R-HSA-163217 Complex I oxidises NADH to NAD+, reduces CoQ to QH2
R-HSA-6799198 Complex I biogenesis
R-HSA-611105 Respiratory electron transport
R-HSA-163200 Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.
R-HSA-1428517 The citric acid (TCA) cycle and respiratory electron transport
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: D3DVG7, J3KPM7, NDUS2_HUMAN, NM_001377299, O75306, Q5VTW0, Q969P3, Q9UEV3, uc330bxw.1, uc330bxw.2
UCSC ID: ENST00000676972.1_3
RefSeq Accession: NM_001377299.1
Protein: O75306 (aka NDUS2_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene NDUFS2:
leigh-nucl-ov (Nuclear Gene-Encoded Leigh Syndrome Spectrum Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.