Human Gene NEURL4 (ENST00000399464.7_7) from GENCODE V47lift37
  Description: neuralized E3 ubiquitin protein ligase 4, transcript variant 1 (from RefSeq NM_032442.3)
Gencode Transcript: ENST00000399464.7_7
Gencode Gene: ENSG00000215041.10_16
Transcript (Including UTRs)
   Position: hg19 chr17:7,218,947-7,232,654 Size: 13,708 Total Exon Count: 29 Strand: -
Coding Region
   Position: hg19 chr17:7,219,442-7,232,631 Size: 13,190 Coding Exon Count: 29 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:7,218,947-7,232,654)mRNA (may differ from genome)Protein (1562 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: NEUL4_HUMAN
DESCRIPTION: RecName: Full=Neuralized-like protein 4;
FUNCTION: Promotes CCP110 ubiquitination and proteasome-dependent degradation. By counteracting accumulation of CP110, maintains normal centriolar homeostasis and preventing formation of ectopic microtubular organizing centers.
SUBUNIT: Interacts with CCP110; this interaction propmotes CCP110 ubiquitination and degradation via the proteasome pathway. Via its interaction with CCP110, may indirectly interact with CEP97. Interacts with the E3 ubiquitin-protein ligase HERC2 and UBE3A. May interact with MAPK6 and hence mediate MAPK6 interaction with UBE3A. Interaction with UBE3A may be indirect and mediated by HERC2.
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, centrosome, centriole. Note=Localizes to procentriole and daughter centriole in growing and quiescent cells (PubMed:22441691). May loose association with centrosomes during mitosis (PubMed:22261722).
TISSUE SPECIFICITY: Widely expressed at high levels (including brain).
DOMAIN: The third NHR domain (NHR 3) is required for localization to both mother and daughter centrioles. NHR 1 restricts targeting to daughter centriole (PubMed:22441691). NHR 3 and 4 are required for CCP110/CEP97-binding, but not for HERC2-binding. NHR 5 and 6 are important for HERC2-binding and centrosomal localization (PubMed:22261722).
PTM: Ubiquitinated; undergoes HERC2-dependent 'Lys-48' ubiquitination. This ubiquitination leads to proteasomal degradation.
SIMILARITY: Contains 6 NHR (neuralized homology repeat) domains.
SEQUENCE CAUTION: Sequence=AAH07227.1; Type=Frameshift; Positions=1263; Sequence=BAB47416.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 20.83 RPKM in Brain - Cerebellum
Total median expression: 438.99 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -6.4023-0.278 Picture PostScript Text
3' UTR -185.80495-0.375 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008985 - ConA-like_lec_gl_sf
IPR006573 - Neu_Z

Pfam Domains:
PF07177 - Neuralized

SCOP Domains:
63817 - Sortase
101801 - Surface presentation of antigens (SPOA)
49899 - Concanavalin A-like lectins/glucanases
50129 - GroES-like
56529 - FAH

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2E63 - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q96JN8
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Cellular Component:
GO:0005737 cytoplasm
GO:0005814 centriole
GO:0005856 cytoskeleton


-  Descriptions from all associated GenBank mRNAs
  AL122080 - Homo sapiens mRNA; cDNA DKFZp434L1550 (from clone DKFZp434L1550).
AL157493 - Homo sapiens mRNA; cDNA DKFZp434A0312 (from clone DKFZp434A0312).
AK092999 - Homo sapiens cDNA FLJ35680 fis, clone SPLEN2019043.
AX747847 - Sequence 1372 from Patent EP1308459.
BC073134 - Homo sapiens neuralized homolog 4 (Drosophila), mRNA (cDNA clone IMAGE:6013030), partial cds.
AL136870 - Homo sapiens mRNA; cDNA DKFZp434L1550 (from clone DKFZp434L1550).
BC007227 - Homo sapiens neuralized homolog 4 (Drosophila), mRNA (cDNA clone IMAGE:2963841), partial cds.
AL833570 - Homo sapiens mRNA; cDNA DKFZp686A1756 (from clone DKFZp686A1756).
AB058690 - Homo sapiens KIAA1787 mRNA for KIAA1787 protein.
JD116134 - Sequence 97158 from Patent EP1572962.
JD484560 - Sequence 465584 from Patent EP1572962.
JD171555 - Sequence 152579 from Patent EP1572962.
JD495157 - Sequence 476181 from Patent EP1572962.
JD488880 - Sequence 469904 from Patent EP1572962.
JD087981 - Sequence 69005 from Patent EP1572962.
JD260541 - Sequence 241565 from Patent EP1572962.
JD143587 - Sequence 124611 from Patent EP1572962.
JD333945 - Sequence 314969 from Patent EP1572962.
JD539990 - Sequence 521014 from Patent EP1572962.
JD426873 - Sequence 407897 from Patent EP1572962.
JD466705 - Sequence 447729 from Patent EP1572962.
JD230476 - Sequence 211500 from Patent EP1572962.
AB384293 - Synthetic construct DNA, clone: pF1KSDA1787, Homo sapiens KIAA1787 gene for KIAA1787 protein, complete cds, without stop codon, in Flexi system.
JD172695 - Sequence 153719 from Patent EP1572962.
JD057807 - Sequence 38831 from Patent EP1572962.
JD445235 - Sequence 426259 from Patent EP1572962.
JD360942 - Sequence 341966 from Patent EP1572962.
JD379483 - Sequence 360507 from Patent EP1572962.
JD436589 - Sequence 417613 from Patent EP1572962.
JD251005 - Sequence 232029 from Patent EP1572962.
JD470235 - Sequence 451259 from Patent EP1572962.
JD362189 - Sequence 343213 from Patent EP1572962.
JD421080 - Sequence 402104 from Patent EP1572962.
JD456116 - Sequence 437140 from Patent EP1572962.
JD387537 - Sequence 368561 from Patent EP1572962.
JD230168 - Sequence 211192 from Patent EP1572962.
JD212170 - Sequence 193194 from Patent EP1572962.
JD541665 - Sequence 522689 from Patent EP1572962.
JD355592 - Sequence 336616 from Patent EP1572962.
JD496098 - Sequence 477122 from Patent EP1572962.
JD080966 - Sequence 61990 from Patent EP1572962.
JD158116 - Sequence 139140 from Patent EP1572962.
JD189861 - Sequence 170885 from Patent EP1572962.
JD544093 - Sequence 525117 from Patent EP1572962.
JD143888 - Sequence 124912 from Patent EP1572962.
JD279053 - Sequence 260077 from Patent EP1572962.
JD125936 - Sequence 106960 from Patent EP1572962.
JD407886 - Sequence 388910 from Patent EP1572962.
JD080624 - Sequence 61648 from Patent EP1572962.
JD076910 - Sequence 57934 from Patent EP1572962.
JD224350 - Sequence 205374 from Patent EP1572962.
JD139007 - Sequence 120031 from Patent EP1572962.
JD252195 - Sequence 233219 from Patent EP1572962.
JD163507 - Sequence 144531 from Patent EP1572962.
JD402248 - Sequence 383272 from Patent EP1572962.
JD116079 - Sequence 97103 from Patent EP1572962.
JD401186 - Sequence 382210 from Patent EP1572962.
JD394916 - Sequence 375940 from Patent EP1572962.
JD116129 - Sequence 97153 from Patent EP1572962.
JD048940 - Sequence 29964 from Patent EP1572962.
JD546929 - Sequence 527953 from Patent EP1572962.
JD322794 - Sequence 303818 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000399464.1, ENST00000399464.2, ENST00000399464.3, ENST00000399464.4, ENST00000399464.5, ENST00000399464.6, KIAA1787, NEUL4_HUMAN, NM_032442, Q6GPI8, Q96IU9, Q96JN8, Q9H0B0, uc319aix.1, uc319aix.2
UCSC ID: ENST00000399464.7_7
RefSeq Accession: NM_032442.3
Protein: Q96JN8 (aka NEUL4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.