Human Gene NOTCH3 (ENST00000263388.7_7) from GENCODE V47lift37
  Description: notch receptor 3 (from RefSeq NM_000435.3)
Gencode Transcript: ENST00000263388.7_7
Gencode Gene: ENSG00000074181.9_10
Transcript (Including UTRs)
   Position: hg19 chr19:15,269,849-15,311,806 Size: 41,958 Total Exon Count: 33 Strand: -
Coding Region
   Position: hg19 chr19:15,271,473-15,311,716 Size: 40,244 Coding Exon Count: 33 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:15,269,849-15,311,806)mRNA (may differ from genome)Protein (2321 aa)
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: NOTC3_HUMAN
DESCRIPTION: RecName: Full=Neurogenic locus notch homolog protein 3; Short=Notch 3; Contains: RecName: Full=Notch 3 extracellular truncation; Contains: RecName: Full=Notch 3 intracellular domain; Flags: Precursor;
FUNCTION: Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs (By similarity).
SUBUNIT: Heterodimer of a C-terminal fragment N(TM) and a N- terminal fragment N(EC) which are probably linked by disulfide bonds (By similarity). Interacts with MAML1, MAML2 and MAML3 which act as transcriptional coactivators for NOTCH3. Interacts with PSMA1. Interacts with HIF1AN.
INTERACTION: Q9R1P4:Psma1 (xeno); NbExp=2; IntAct=EBI-1236377, EBI-991653;
SUBCELLULAR LOCATION: Cell membrane; Single-pass type I membrane protein.
SUBCELLULAR LOCATION: Notch 3 intracellular domain: Nucleus. Note=Following proteolytical processing NICD is translocated to the nucleus.
TISSUE SPECIFICITY: Ubiquitously expressed in fetal and adult tissues.
PTM: Synthesized in the endoplasmic reticulum as an inactive form which is proteolytically cleaved by a furin-like convertase in the trans-Golgi network before it reaches the plasma membrane to yield an active, ligand-accessible form. Cleavage results in a C- terminal fragment N(TM) and a N-terminal fragment N(EC). Following ligand binding, it is cleaved by TNF-alpha converting enzyme (TACE) to yield a membrane-associated intermediate fragment called notch extracellular truncation (NEXT). This fragment is then cleaved by presenilin dependent gamma-secretase to release a notch-derived peptide containing the intracellular domain (NICD) from the membrane (By similarity).
PTM: Phosphorylated (By similarity).
PTM: Hydroxylated by HIF1AN.
DISEASE: Defects in NOTCH3 are the cause of cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL) [MIM:125310]. CADASIL causes a type of stroke and dementia of which key features include recurrent subcortical ischemic events and vascular dementia. The disorder affects relatively young adults of both sexes. Mutations affect highly conserved cysteine residues within epidermal growth factor (EGF)-like repeat domains in the extracellular part of the receptor.
SIMILARITY: Belongs to the NOTCH family.
SIMILARITY: Contains 5 ANK repeats.
SIMILARITY: Contains 34 EGF-like domains.
SIMILARITY: Contains 3 LNR (Lin/Notch) repeats.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org//Genes/NOTCH3ID41557ch19p13.html";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/NOTCH3";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NOTCH3
Diseases sorted by gene-association score: cerebral arteriopathy with subcortical infarcts and leukoencephalopathy 1* (1683), myofibromatosis, infantile 2* (1379), lateral meningocele syndrome* (1378), infantile myofibromatosis* (547), myofibromatosis, infantile, 1* (283), cerebrovascular disease (43), meningocele (32), pseudobulbar palsy (26), vascular dementia (25), cerebral degeneration (20), balo concentric sclerosis (18), familial hemiplegic migraine (15), migraine with or without aura 1 (13), dementia (12), migraine with aura (11), stroke, ischemic (9), transient cerebral ischemia (8), ovarian serous carcinoma (8), ossifying fibroma (7), binswanger's disease (7), atypical choroid plexus papilloma (6), hemiplegic migraine (6), lung adenoma (6), chorioretinal scar (5), hajdu-cheney syndrome (5), venous malformations, multiple cutaneous and mucosal (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 141.89 RPKM in Artery - Tibial
Total median expression: 1174.14 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -42.5090-0.472 Picture PostScript Text
3' UTR -539.201624-0.332 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002110 - Ankyrin_rpt
IPR020683 - Ankyrin_rpt-contain_dom
IPR024600 - DUF3454_notch
IPR000742 - EG-like_dom
IPR001881 - EGF-like_Ca-bd
IPR013032 - EGF-like_CS
IPR000152 - EGF-type_Asp/Asn_hydroxyl_site
IPR018097 - EGF_Ca-bd_CS
IPR008297 - Notch
IPR022331 - Notch_3
IPR000800 - Notch_dom
IPR010660 - Notch_NOD_dom
IPR011656 - Notch_NODP_dom

Pfam Domains:
PF00008 - EGF-like domain
PF00023 - Ankyrin repeat
PF00066 - LNR domain
PF06816 - NOTCH protein
PF07645 - Calcium-binding EGF domain
PF07684 - NOTCH protein
PF12661 - Human growth factor-like EGF
PF12796 - Ankyrin repeats (3 copies)
PF13606 - Ankyrin repeat
PF13637 - Ankyrin repeats (many copies)
PF13857 - Ankyrin repeats (many copies)

SCOP Domains:
140860 - Pseudo ankyrin repeat-like
48403 - Ankyrin repeat
57196 - EGF/Laminin
57184 - Growth factor receptor domain
90193 - Notch domain

ModBase Predicted Comparative 3D Structure on Q9UM47
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0019899 enzyme binding
GO:0038023 signaling receptor activity
GO:0042802 identical protein binding
GO:0045296 cadherin binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006367 transcription initiation from RNA polymerase II promoter
GO:0007219 Notch signaling pathway
GO:0007221 positive regulation of transcription of Notch receptor target
GO:0007275 multicellular organism development
GO:0030154 cell differentiation
GO:0030900 forebrain development
GO:0045596 negative regulation of cell differentiation
GO:0045665 negative regulation of neuron differentiation
GO:0045746 negative regulation of Notch signaling pathway
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048661 positive regulation of smooth muscle cell proliferation
GO:0048663 neuron fate commitment
GO:0048844 artery morphogenesis
GO:0050793 regulation of developmental process
GO:0072104 glomerular capillary formation

Cellular Component:
GO:0000139 Golgi membrane
GO:0005576 extracellular region
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005789 endoplasmic reticulum membrane
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0015629 actin cytoskeleton
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0043235 receptor complex


-  Descriptions from all associated GenBank mRNAs
  LP896132 - Sequence 996 from Patent EP3253886.
U97669 - Homo sapiens Notch3 (NOTCH3) mRNA, complete cds.
JD259852 - Sequence 240876 from Patent EP1572962.
JD290452 - Sequence 271476 from Patent EP1572962.
JD506684 - Sequence 487708 from Patent EP1572962.
JD215305 - Sequence 196329 from Patent EP1572962.
JD218355 - Sequence 199379 from Patent EP1572962.
JD485127 - Sequence 466151 from Patent EP1572962.
JD242221 - Sequence 223245 from Patent EP1572962.
JD127342 - Sequence 108366 from Patent EP1572962.
JD383442 - Sequence 364466 from Patent EP1572962.
JD381590 - Sequence 362614 from Patent EP1572962.
JD426066 - Sequence 407090 from Patent EP1572962.
JD247733 - Sequence 228757 from Patent EP1572962.
JD477118 - Sequence 458142 from Patent EP1572962.
JD259314 - Sequence 240338 from Patent EP1572962.
JD148540 - Sequence 129564 from Patent EP1572962.
JD528824 - Sequence 509848 from Patent EP1572962.
JD521641 - Sequence 502665 from Patent EP1572962.
JD494077 - Sequence 475101 from Patent EP1572962.
JD545085 - Sequence 526109 from Patent EP1572962.
JD552652 - Sequence 533676 from Patent EP1572962.
JD163027 - Sequence 144051 from Patent EP1572962.
JD335498 - Sequence 316522 from Patent EP1572962.
JD248735 - Sequence 229759 from Patent EP1572962.
JD487266 - Sequence 468290 from Patent EP1572962.
JD264432 - Sequence 245456 from Patent EP1572962.
JD138140 - Sequence 119164 from Patent EP1572962.
JD299883 - Sequence 280907 from Patent EP1572962.
JD556186 - Sequence 537210 from Patent EP1572962.
CQ873819 - Sequence 238 from Patent WO2004076622.
DD413656 - Regulation of Mammalian Cells.
AB209447 - Homo sapiens mRNA for Notch homolog 3 variant protein.
JD112242 - Sequence 93266 from Patent EP1572962.
DQ156543 - Homo sapiens notch3-like (NOTCH3) pseudogene mRNA, partial sequence.
DQ156542 - Homo sapiens notch3-like (NOTCH3) pseudogene mRNA, partial sequence.
DQ156541 - Homo sapiens notch3-like (NOTCH3) pseudogene mRNA, partial sequence.
DQ156540 - Homo sapiens notch3-like (NOTCH3) pseudogene mRNA, partial sequence.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9UM47 (Reactome details) participates in the following event(s):

R-HSA-9013361 NEXT3 is cleaved to produce NICD3
R-HSA-9013284 NOTCH3-ligand complex is cleaved to produce NEXT3
R-HSA-9017855 NICD3 binds to TACC3
R-HSA-9018573 NOTCH3 binds activated EGFR
R-HSA-9013631 NICD3 binds RBPJ and MAML in the nucleus
R-HSA-9018572 EGFR phosphorylates NOTCH3
R-HSA-1912349 Fucosylation of Pre-NOTCH by POFUT1
R-HSA-9021520 NOTCH3 binds WWP2
R-HSA-157100 NOTCH3 binds JAG1
R-HSA-157124 NOTCH3 binds JAG2
R-HSA-157145 NOTCH3 binds DLL1
R-HSA-2168136 NOTCH3 binds DLL4
R-HSA-9017797 NOTCH3 binds YBX1
R-HSA-9013652 NOTCH3 coactivator complex binds HES1 gene promoter
R-HSA-9016916 NOTCH3 coactivator complex binds the PTCRA gene promoter
R-HSA-9018542 NOTCH3 coactivator complex binds DLGAP5 gene promoter
R-HSA-9021325 NOTCH3 coactivator complex and STAT1 bind HES1 gene promoter
R-HSA-9021406 NOTCH3 coactivator complex binds PBX1 gene promoter
R-HSA-9021480 NOTCH3 coactivator complex binds WWC1 (Kibra) gene promoter
R-HSA-212356 Formation of CSL-NICD coactivator complex
R-HSA-1912353 Glucosylation of Pre-NOTCH by POGLUT1
R-HSA-1912355 Glycosylation of Pre-NOTCH by FRINGE
R-HSA-1912369 NOTCH precursor cleaved to form mature NOTCH
R-HSA-1912378 Sialylation of Pre-NOTCH
R-HSA-1912352 Galactosylation of Pre-NOTCH
R-HSA-1912372 Fringe-modified Pre-NOTCH is cleaved by FURIN
R-HSA-9021523 WWP2 ubiquitinates NOTCH3
R-HSA-9021451 NOTCH1,NOTCH3 coactivator complex binds PLXND1 gene promoter
R-HSA-9013069 Ubiquitination of DLL/JAG ligands upon binding to NOTCH3
R-HSA-1912408 Pre-NOTCH Transcription and Translation
R-HSA-9013507 NOTCH3 Activation and Transmission of Signal to the Nucleus
R-HSA-157052 NICD traffics to nucleus
R-HSA-9017802 Noncanonical activation of NOTCH3
R-HSA-9013508 NOTCH3 Intracellular Domain Regulates Transcription
R-HSA-1912399 Pre-NOTCH Processing in the Endoplasmic Reticulum
R-HSA-1912422 Pre-NOTCH Expression and Processing
R-HSA-9012852 Signaling by NOTCH3
R-HSA-350054 Notch-HLH transcription pathway
R-HSA-1912420 Pre-NOTCH Processing in Golgi
R-HSA-5083630 Defective LFNG causes SCDO3
R-HSA-157118 Signaling by NOTCH
R-HSA-212436 Generic Transcription Pathway
R-HSA-3906995 Diseases associated with O-glycosylation of proteins
R-HSA-162582 Signal Transduction
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-3781865 Diseases of glycosylation
R-HSA-74160 Gene expression (Transcription)
R-HSA-1643685 Disease

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000263388.1, ENST00000263388.2, ENST00000263388.3, ENST00000263388.4, ENST00000263388.5, ENST00000263388.6, NM_000435, NOTC3_HUMAN, Q9UEB3, Q9UM47, Q9UPL3, Q9Y6L8, uc317hjm.1, uc317hjm.2
UCSC ID: ENST00000263388.7_7
RefSeq Accession: NM_000435.3
Protein: Q9UM47 (aka NOTC3_HUMAN or NTC3_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene NOTCH3:
cadasil (CADASIL)
lms (NOTCH3-Related Lateral Meningocele Syndrome)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.