Human Gene NOTCH4 (ENST00000375023.3_7) from GENCODE V47lift37
  Description: notch receptor 4, transcript variant 3 (from RefSeq NR_134950.2)
Gencode Transcript: ENST00000375023.3_7
Gencode Gene: ENSG00000204301.6_10
Transcript (Including UTRs)
   Position: hg19 chr6:32,162,620-32,191,844 Size: 29,225 Total Exon Count: 30 Strand: -
Coding Region
   Position: hg19 chr6:32,163,214-32,191,705 Size: 28,492 Coding Exon Count: 30 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:32,162,620-32,191,844)mRNA (may differ from genome)Protein (2003 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: NOTC4_HUMAN
DESCRIPTION: RecName: Full=Neurogenic locus notch homolog protein 4; Short=Notch 4; Short=hNotch4; Contains: RecName: Full=Notch 4 extracellular truncation; Contains: RecName: Full=Notch 4 intracellular domain; Flags: Precursor;
FUNCTION: Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs. May regulate branching morphogenesis in the developing vascular system (By similarity).
SUBUNIT: Heterodimer of a C-terminal fragment N(TM) and a N- terminal fragment N(EC) which are probably linked by disulfide bonds (By similarity). Interacts with MAML1, MAML2 and MAML3 which act as transcriptional coactivators for NOTCH4.
SUBCELLULAR LOCATION: Cell membrane; Single-pass type I membrane protein.
SUBCELLULAR LOCATION: Notch 4 intracellular domain: Nucleus. Note=Following proteolytical processing NICD is translocated to the nucleus.
TISSUE SPECIFICITY: Highly expressed in the heart, moderately in the lung and placenta and at low levels in the liver, skeletal muscle, kidney, pancreas, spleen, lymph node, thymus, bone marrow and fetal liver. No expression was seen in adult brain or peripheral blood leukocytes.
PTM: Synthesized in the endoplasmic reticulum as an inactive form which is proteolytically cleaved by a furin-like convertase in the trans-Golgi network before it reaches the plasma membrane to yield an active, ligand-accessible form. Cleavage results in a C- terminal fragment N(TM) and a N-terminal fragment N(EC). Following ligand binding, it is cleaved by TNF-alpha converting enzyme (TACE) to yield a membrane-associated intermediate fragment called notch extracellular truncation (NEXT). This fragment is then cleaved by presenilin dependent gamma-secretase to release a notch-derived peptide containing the intracellular domain (NICD) from the membrane (By similarity).
PTM: Phosphorylated (By similarity).
POLYMORPHISM: The poly-Leu region of NOTCH4 (in the signal peptide) is polymorphic and the number of Leu varies in the population (from 6 to 12).
SIMILARITY: Belongs to the NOTCH family.
SIMILARITY: Contains 5 ANK repeats.
SIMILARITY: Contains 28 EGF-like domains.
SIMILARITY: Contains 3 LNR (Lin/Notch) repeats.
SEQUENCE CAUTION: Sequence=BAA09708.1; Type=Frameshift; Positions=1438, 1463;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NOTCH4
Diseases sorted by gene-association score: cerebral degeneration (14), cerebral arteriopathy with subcortical infarcts and leukoencephalopathy 1 (12), pseudobulbar palsy (8), schizoaffective disorder (8), atypical choroid plexus papilloma (6), chorioretinal scar (5), hajdu-cheney syndrome (5), schizophrenia (5), venous malformations, multiple cutaneous and mucosal (4), migraine with or without aura 1 (2), breast cancer (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 25.88 RPKM in Adipose - Visceral (Omentum)
Total median expression: 285.72 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -58.20139-0.419 Picture PostScript Text
3' UTR -176.10594-0.296 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002110 - Ankyrin_rpt
IPR020683 - Ankyrin_rpt-contain_dom
IPR000742 - EG-like_dom
IPR001881 - EGF-like_Ca-bd
IPR013032 - EGF-like_CS
IPR000152 - EGF-type_Asp/Asn_hydroxyl_site
IPR018097 - EGF_Ca-bd_CS
IPR008297 - Notch
IPR022355 - Notch_4
IPR000800 - Notch_dom
IPR011656 - Notch_NODP_dom

Pfam Domains:
PF00008 - EGF-like domain
PF00023 - Ankyrin repeat
PF00066 - LNR domain
PF06816 - NOTCH protein
PF07645 - Calcium-binding EGF domain
PF07684 - NOTCH protein
PF12661 - Human growth factor-like EGF
PF12796 - Ankyrin repeats (3 copies)
PF13606 - Ankyrin repeat
PF13637 - Ankyrin repeats (many copies)
PF13857 - Ankyrin repeats (many copies)

SCOP Domains:
140860 - Pseudo ankyrin repeat-like
48403 - Ankyrin repeat
57196 - EGF/Laminin
57184 - Growth factor receptor domain
90193 - Notch domain

ModBase Predicted Comparative 3D Structure on Q99466
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0038023 signaling receptor activity
GO:0046982 protein heterodimerization activity

Biological Process:
GO:0001569 branching involved in blood vessel morphogenesis
GO:0001709 cell fate determination
GO:0001763 morphogenesis of a branching structure
GO:0001886 endothelial cell morphogenesis
GO:0001944 vasculature development
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006367 transcription initiation from RNA polymerase II promoter
GO:0007219 Notch signaling pathway
GO:0007221 positive regulation of transcription of Notch receptor target
GO:0007275 multicellular organism development
GO:0030097 hemopoiesis
GO:0030154 cell differentiation
GO:0030879 mammary gland development
GO:0042060 wound healing
GO:0045446 endothelial cell differentiation
GO:0045596 negative regulation of cell differentiation
GO:0045602 negative regulation of endothelial cell differentiation
GO:0045893 positive regulation of transcription, DNA-templated
GO:0050793 regulation of developmental process

Cellular Component:
GO:0000139 Golgi membrane
GO:0005576 extracellular region
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005789 endoplasmic reticulum membrane
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AJ243937 - Homo sapiens mRNA for G18.1a and G18.1b proteins (G18.1a and G18.1b genes, located in the class III region of the major histocompatibility complex).
BC033869 - Homo sapiens Notch homolog 4 (Drosophila), mRNA (cDNA clone IMAGE:5204956), with apparent retained intron.
AK131314 - Homo sapiens cDNA FLJ16302 fis, clone PLACE7000502, highly similar to Human Notch4 (hNotch4) mRNA.
D63395 - Homo sapiens NOTCH4 mRNA for notch related protein, partial cds.
JD096804 - Sequence 77828 from Patent EP1572962.
BC140782 - Homo sapiens Notch homolog 4 (Drosophila), mRNA (cDNA clone MGC:176459 IMAGE:9021650), complete cds.
BC144540 - Homo sapiens cDNA clone IMAGE:9053067.
BC144541 - Homo sapiens cDNA clone IMAGE:9053068.
JD434054 - Sequence 415078 from Patent EP1572962.
JD412104 - Sequence 393128 from Patent EP1572962.
JD553623 - Sequence 534647 from Patent EP1572962.
JD245140 - Sequence 226164 from Patent EP1572962.
JD234476 - Sequence 215500 from Patent EP1572962.
JD302588 - Sequence 283612 from Patent EP1572962.
JD179148 - Sequence 160172 from Patent EP1572962.
JD371672 - Sequence 352696 from Patent EP1572962.
JD119934 - Sequence 100958 from Patent EP1572962.
U95299 - Human Notch4 (hNotch4) mRNA, complete cds.
AK294161 - Homo sapiens cDNA FLJ57267 complete cds, highly similar to Neurogenic locus notch homolog protein 4 precursor.
AK293692 - Homo sapiens cDNA FLJ59128 complete cds, highly similar to Neurogenic locus notch homolog protein 4 precursor.
BC063815 - Homo sapiens Notch homolog 4 (Drosophila), mRNA (cDNA clone IMAGE:6180034), complete cds.
AK290785 - Homo sapiens cDNA FLJ77085 complete cds, highly similar to Homo sapiens Notch homolog 4 (Drosophila), mRNA.
JD465388 - Sequence 446412 from Patent EP1572962.
JD498208 - Sequence 479232 from Patent EP1572962.
JD476019 - Sequence 457043 from Patent EP1572962.
JD068654 - Sequence 49678 from Patent EP1572962.
JD186885 - Sequence 167909 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q99466 (Reactome details) participates in the following event(s):

R-HSA-157648 NEXT4 is cleaved to produce NICD4
R-HSA-157941 NICD4 traffics to the nucleus
R-HSA-157649 Notch 4-ligand complex is cleaved to produce NEXT4
R-HSA-1912349 Fucosylation of Pre-NOTCH by POFUT1
R-HSA-157633 Notch 4 heterodimer binds with a Notch ligand in the extracellular space
R-HSA-212356 Formation of CSL-NICD coactivator complex
R-HSA-1912353 Glucosylation of Pre-NOTCH by POGLUT1
R-HSA-1912355 Glycosylation of Pre-NOTCH by FRINGE
R-HSA-1912369 NOTCH precursor cleaved to form mature NOTCH
R-HSA-1912378 Sialylation of Pre-NOTCH
R-HSA-1912352 Galactosylation of Pre-NOTCH
R-HSA-1912372 Fringe-modified Pre-NOTCH is cleaved by FURIN
R-HSA-1912408 Pre-NOTCH Transcription and Translation
R-HSA-157212 A third proteolytic cleavage releases NICD
R-HSA-1980150 Signaling by NOTCH4
R-HSA-157052 NICD traffics to nucleus
R-HSA-156988 Receptor-ligand binding initiates the second proteolytic cleavage of Notch receptor
R-HSA-1912399 Pre-NOTCH Processing in the Endoplasmic Reticulum
R-HSA-1912422 Pre-NOTCH Expression and Processing
R-HSA-157118 Signaling by NOTCH
R-HSA-350054 Notch-HLH transcription pathway
R-HSA-1912420 Pre-NOTCH Processing in Golgi
R-HSA-5083630 Defective LFNG causes SCDO3
R-HSA-162582 Signal Transduction
R-HSA-212436 Generic Transcription Pathway
R-HSA-3906995 Diseases associated with O-glycosylation of proteins
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-3781865 Diseases of glycosylation
R-HSA-74160 Gene expression (Transcription)
R-HSA-1643685 Disease

-  Other Names for This Gene
  Alternate Gene Symbols: B0V183, B0V1X5, ENST00000375023.1, ENST00000375023.2, INT3, NOTC4_HUMAN, NOTCH4 , NR_134950, O00306, Q5SSY7, Q99458, Q99466, Q99940, Q9H3S8, Q9UII9, Q9UIJ0, uc318lzn.1, uc318lzn.2
UCSC ID: ENST00000375023.3_7
RefSeq Accession: NM_004557.4
Protein: Q99466 (aka NOTC4_HUMAN or NTC4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.