Human Gene NPEPPS (ENST00000322157.9_9) from GENCODE V47lift37
  Description: aminopeptidase puromycin sensitive, transcript variant 1 (from RefSeq NM_006310.4)
Gencode Transcript: ENST00000322157.9_9
Gencode Gene: ENSG00000141279.18_19
Transcript (Including UTRs)
   Position: hg19 chr17:45,608,474-45,700,642 Size: 92,169 Total Exon Count: 23 Strand: +
Coding Region
   Position: hg19 chr17:45,608,667-45,699,286 Size: 90,620 Coding Exon Count: 23 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:45,608,474-45,700,642)mRNA (may differ from genome)Protein (919 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PSA_HUMAN
DESCRIPTION: RecName: Full=Puromycin-sensitive aminopeptidase; Short=PSA; EC=3.4.11.14; AltName: Full=Cytosol alanyl aminopeptidase; Short=AAP-S;
FUNCTION: Aminopeptidase with broad substrate specificity for several peptides. Involved in proteolytic events essential for cell growth and viability. May act as regulator of neuropeptide activity. Plays a role in the antigen-processing pathway for MHC class I molecules. Involved in the N-terminal trimming of cytotoxic T-cell epitope precursors. Digests the poly-Q peptides found in many cellular proteins. Digests tau from normal brain more efficiently than tau from Alzheimer disease brain.
CATALYTIC ACTIVITY: Release of an N-terminal amino acid, preferentially alanine, from a wide range of peptides, amides and arylamides.
COFACTOR: Binds 1 zinc ion per subunit (By similarity).
ENZYME REGULATION: Strongly inhibited by bestatin, leuhistin, actinonin, amastatin, 1,10-phenanthroline, DFP, PCMBS, Zn(2+), Cd(2+), Co(2+), Cu(2+), Hg(2+), EDTA and puromycin. Not inhibited by PMSF, and only slightly inhibited by leupeptin and aprotinin. Activity is increased by Mg(2+) and Ca(2+).
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=2.20 mM for Lys-p-NA; KM=0.25 mM for Leu-p-NA; KM=0.27 mM for Ala-p-NA; KM=0.80 mM for Met-p-NA; KM=0.47 mM for Pro-p-NA; KM=0.21 mM for Val-p-NA; KM=182 uM for Ala-MCA; KM=189 uM for Met-MCA; KM=220 uM for Lys-MCA; KM=91 uM for Leu-MCA; KM=167 uM for Phe-MCA; pH dependence: Optimum pH is 7.5. Stable from pH 5.0 to 8.0; Temperature dependence: Stable up to 40 degrees Celsius;
SUBUNIT: Monomer.
INTERACTION: P56537:EIF6; NbExp=1; IntAct=EBI-1046129, EBI-372243;
SUBCELLULAR LOCATION: Cytoplasm, cytosol. Nucleus (Potential).
TISSUE SPECIFICITY: Detected in liver, epithelium of renal tubules, epithelium of small and large intestine, gastric epithelial cells, and alveoli of the lung (at protein level).
SIMILARITY: Belongs to the peptidase M1 family.
CAUTION: It is uncertain whether Met-1 or Met-45 is the initiator. N-terminal sequencing in PubMed:10978616 suggests that Met-45 is used, followed by methionine initiator removal.
SEQUENCE CAUTION: Sequence=AAH65294.2; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=CAA68964.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 47.82 RPKM in Esophagus - Mucosa
Total median expression: 1104.78 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -53.50193-0.277 Picture PostScript Text
3' UTR -330.901356-0.244 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR024571 - DUF3358
IPR001930 - Peptidase_M1
IPR014782 - Peptidase_M1_N
IPR015568 - Peptidase_M1_puromycin-sens

Pfam Domains:
PF01433 - Peptidase family M1 domain
PF11838 - ERAP1-like C-terminal domain
PF17900 - Peptidase M1 N-terminal domain

SCOP Domains:
159238 - SO1590-like
63737 - Leukotriene A4 hydrolase N-terminal domain
55486 - Metalloproteases ("zincins"), catalytic domain

ModBase Predicted Comparative 3D Structure on P55786
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004177 aminopeptidase activity
GO:0008233 peptidase activity
GO:0008237 metallopeptidase activity
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0042277 peptide binding
GO:0046872 metal ion binding
GO:0070006 metalloaminopeptidase activity

Biological Process:
GO:0000209 protein polyubiquitination
GO:0006508 proteolysis
GO:0043171 peptide catabolic process
GO:0071456 cellular response to hypoxia
GO:1903955 positive regulation of protein targeting to mitochondrion

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AK303037 - Homo sapiens cDNA FLJ55506 complete cds, highly similar to Puromycin-sensitive aminopeptidase (EC3.4.11.-).
LF384798 - JP 2014500723-A/192301: Polycomb-Associated Non-Coding RNAs.
AK096709 - Homo sapiens cDNA FLJ39390 fis, clone PLACE6004219, highly similar to Puromycin-sensitive aminopeptidase (EC 3.4.11.-).
Y07701 - H.sapiens mRNA for aminopeptidase.
AK095877 - Homo sapiens cDNA FLJ38558 fis, clone HCHON2003327, highly similar to Puromycin-sensitive aminopeptidase (EC 3.4.11.-).
AK296887 - Homo sapiens cDNA FLJ53354 complete cds, highly similar to Puromycin-sensitive aminopeptidase (EC 3.4.11.-).
AJ132583 - Homo sapiens mRNA for puromycin sensitive aminopeptidase, partial.
BC065294 - Homo sapiens aminopeptidase puromycin sensitive, mRNA (cDNA clone MGC:70648 IMAGE:6059589), complete cds.
KJ901986 - Synthetic construct Homo sapiens clone ccsbBroadEn_11380 NPEPPS gene, encodes complete protein.
MA620375 - JP 2018138019-A/192301: Polycomb-Associated Non-Coding RNAs.
JD210860 - Sequence 191884 from Patent EP1572962.
JD099143 - Sequence 80167 from Patent EP1572962.
JD124742 - Sequence 105766 from Patent EP1572962.
JD126018 - Sequence 107042 from Patent EP1572962.
JD128766 - Sequence 109790 from Patent EP1572962.
JD400111 - Sequence 381135 from Patent EP1572962.
JD210851 - Sequence 191875 from Patent EP1572962.
JD417044 - Sequence 398068 from Patent EP1572962.
JD129250 - Sequence 110274 from Patent EP1572962.
JD464720 - Sequence 445744 from Patent EP1572962.
JD150594 - Sequence 131618 from Patent EP1572962.
JD132789 - Sequence 113813 from Patent EP1572962.
JD418667 - Sequence 399691 from Patent EP1572962.
JD151807 - Sequence 132831 from Patent EP1572962.
AK297107 - Homo sapiens cDNA FLJ56108 complete cds, highly similar to Puromycin-sensitive aminopeptidase (EC 3.4.11.-).
AK311414 - Homo sapiens cDNA, FLJ18456.
LF327572 - JP 2014500723-A/135075: Polycomb-Associated Non-Coding RNAs.
LF327571 - JP 2014500723-A/135074: Polycomb-Associated Non-Coding RNAs.
AK293450 - Homo sapiens cDNA FLJ56052 complete cds, highly similar to Puromycin-sensitive aminopeptidase (EC 3.4.11.-).
AK293995 - Homo sapiens cDNA FLJ53310 complete cds, highly similar to Puromycin-sensitive aminopeptidase (EC 3.4.11.-).
LF327568 - JP 2014500723-A/135071: Polycomb-Associated Non-Coding RNAs.
JD023422 - Sequence 4446 from Patent EP1572962.
JD032913 - Sequence 13937 from Patent EP1572962.
LF327566 - JP 2014500723-A/135069: Polycomb-Associated Non-Coding RNAs.
JD023705 - Sequence 4729 from Patent EP1572962.
JD035567 - Sequence 16591 from Patent EP1572962.
AK096491 - Homo sapiens cDNA FLJ39172 fis, clone OCBBF2003091, highly similar to PUROMYCIN-SENSITIVE AMINOPEPTIDASE (EC 3.4.11.-).
LF327563 - JP 2014500723-A/135066: Polycomb-Associated Non-Coding RNAs.
LF327562 - JP 2014500723-A/135065: Polycomb-Associated Non-Coding RNAs.
LF327561 - JP 2014500723-A/135064: Polycomb-Associated Non-Coding RNAs.
LF327555 - JP 2014500723-A/135058: Polycomb-Associated Non-Coding RNAs.
LF327554 - JP 2014500723-A/135057: Polycomb-Associated Non-Coding RNAs.
LF327553 - JP 2014500723-A/135056: Polycomb-Associated Non-Coding RNAs.
JD498902 - Sequence 479926 from Patent EP1572962.
LF327551 - JP 2014500723-A/135054: Polycomb-Associated Non-Coding RNAs.
JD171035 - Sequence 152059 from Patent EP1572962.
JD443606 - Sequence 424630 from Patent EP1572962.
JD479554 - Sequence 460578 from Patent EP1572962.
LF327550 - JP 2014500723-A/135053: Polycomb-Associated Non-Coding RNAs.
JD483886 - Sequence 464910 from Patent EP1572962.
LF327549 - JP 2014500723-A/135052: Polycomb-Associated Non-Coding RNAs.
JD081717 - Sequence 62741 from Patent EP1572962.
JD555571 - Sequence 536595 from Patent EP1572962.
JD389235 - Sequence 370259 from Patent EP1572962.
JD076188 - Sequence 57212 from Patent EP1572962.
JD260010 - Sequence 241034 from Patent EP1572962.
JD133371 - Sequence 114395 from Patent EP1572962.
JD153823 - Sequence 134847 from Patent EP1572962.
JD153824 - Sequence 134848 from Patent EP1572962.
LF327548 - JP 2014500723-A/135051: Polycomb-Associated Non-Coding RNAs.
MA563149 - JP 2018138019-A/135075: Polycomb-Associated Non-Coding RNAs.
MA563148 - JP 2018138019-A/135074: Polycomb-Associated Non-Coding RNAs.
MA563145 - JP 2018138019-A/135071: Polycomb-Associated Non-Coding RNAs.
MA563143 - JP 2018138019-A/135069: Polycomb-Associated Non-Coding RNAs.
MA563140 - JP 2018138019-A/135066: Polycomb-Associated Non-Coding RNAs.
MA563139 - JP 2018138019-A/135065: Polycomb-Associated Non-Coding RNAs.
MA563138 - JP 2018138019-A/135064: Polycomb-Associated Non-Coding RNAs.
MA563132 - JP 2018138019-A/135058: Polycomb-Associated Non-Coding RNAs.
MA563131 - JP 2018138019-A/135057: Polycomb-Associated Non-Coding RNAs.
MA563130 - JP 2018138019-A/135056: Polycomb-Associated Non-Coding RNAs.
MA563128 - JP 2018138019-A/135054: Polycomb-Associated Non-Coding RNAs.
MA563127 - JP 2018138019-A/135053: Polycomb-Associated Non-Coding RNAs.
MA563126 - JP 2018138019-A/135052: Polycomb-Associated Non-Coding RNAs.
MA563125 - JP 2018138019-A/135051: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P55786 (Reactome details) participates in the following event(s):

R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-1280218 Adaptive Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: B7Z463, ENST00000322157.1, ENST00000322157.2, ENST00000322157.3, ENST00000322157.4, ENST00000322157.5, ENST00000322157.6, ENST00000322157.7, ENST00000322157.8, NM_006310, P55786, PSA, PSA_HUMAN, Q6P145, Q9NP16, Q9UEM2, uc317rfj.1, uc317rfj.2
UCSC ID: ENST00000322157.9_9
RefSeq Accession: NM_006310.4
Protein: P55786 (aka PSA_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.