Human Gene NR0B1 (ENST00000378970.5_7) from GENCODE V47lift37
  Description: nuclear receptor subfamily 0 group B member 1 (from RefSeq NM_000475.5)
Gencode Transcript: ENST00000378970.5_7
Gencode Gene: ENSG00000169297.8_9
Transcript (Including UTRs)
   Position: hg19 chrX:30,322,323-30,327,507 Size: 5,185 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chrX:30,322,696-30,327,480 Size: 4,785 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:30,322,323-30,327,507)mRNA (may differ from genome)Protein (470 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: NR0B1_HUMAN
DESCRIPTION: RecName: Full=Nuclear receptor subfamily 0 group B member 1; AltName: Full=DSS-AHC critical region on the X chromosome protein 1; AltName: Full=Nuclear receptor DAX-1;
FUNCTION: Orphan nuclear receptor. Component of a cascade required for the development of the hypothalamic-pituitary-adrenal-gonadal axis. Acts as a coregulatory protein that inhibits the transcriptional activity of other nuclear receptors through heterodimeric interactions. May also have a role in the development of the embryo and in the maintenance of embryonic stem cell pluripotency (By similarity).
SUBUNIT: Homodimer. Interacts with NR5A1, NR5A2, NR0B2 and with COPS2.
INTERACTION: P35398:RORA; NbExp=2; IntAct=EBI-946109, EBI-748689;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Note=Shuttles between the cytoplasm and nucleus. Homodimers exits in the cytoplasm and in the nucleus.
DOMAIN: Homodimerization involved an interaction between amino and carboxy termini involving LXXLL motifs and steroid binding domain (AF-2 motif). Heterodimerizes with NR5A1 and NROB2 through its N- terminal LXXLL motifs.
DISEASE: Defects in NR0B1 are the cause of X-linked adrenal hypoplasia congenital (XL-AHC) [MIM:300200]; also known as X- linked Addison disease (AHX). XL-AHC is a developmental disorder of the adrenal gland that results in profound hormonal deficiencies and is lethal if untreated. It is characterized by the absence of the permanent zone of the adrenal cortex and by a structural disorganization of the glands. Hypogonadotropic hypogonadism (HHG) is frequently associated with this disorder. HHG is a condition resulting from or characterized by abnormally decreased gonadal function, with retardation of growth and sexual development.
DISEASE: Defects in NR0B1 are the cause of 46,XY sex reversal type 2 (SRXY2) [MIM:300018]. It is a condition characterized by male- to-female sex reversal in the presence of a normal 46,XY karyotype. Note=XY individuals with a duplication of part of the short arm of the X chromosome and an intact SRY gene develop as females. The single X chromosome in these individuals does not undergo X-chromosome inactivation; therefore, these individuals presumably carry 2 active copies of genes, including the NR0B1 gene, in the duplicated region. Individuals with deletion of this region develop as males. Genes within the dosage-sensitive sex reversal region are, therefore, not essential for testis development, but, when present in a double dose, interfere with testis formation.
SIMILARITY: Belongs to the nuclear hormone receptor family. NR0 subfamily.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/NR0B1";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NR0B1
Diseases sorted by gene-association score: adrenal hypoplasia, congenital* (1362), 46xy sex reversal 2, dosage-sensitive* (900), cytomegalic congenital adrenal hypoplasia* (750), isolated x-linked adrenal hypoplasia congenita* (100), nr0b1-related 46,xy dsd and 46,xy cgd* (100), chromosome xp21 deletion syndrome* (83), hypogonadism (23), glycerol kinase deficiency (21), adrenal cortical hypofunction (19), 46 xy gonadal dysgenesis* (19), image syndrome (15), hypogonadotropic hypogonadism (14), pyle disease (12), gonadal dysgenesis (9), adrenal cortex disease (8), adrenal gland disease (8), 46,xy partial gonadal dysgenesis* (8), pyosalpinx (7), gestational trophoblastic neoplasm (7), kallmann syndrome (7), alternating hemiplegia of childhood (6), familial glucocorticoid deficiency (6), adrenal carcinoma (5), gonadal disease (5), trophoblastic neoplasm (5), ewing sarcoma (3), wilms tumor susceptibility-5 (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 24.68 RPKM in Adrenal Gland
Total median expression: 53.97 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -7.2027-0.267 Picture PostScript Text
3' UTR -63.40373-0.170 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008946 - Nucl_hormone_rcpt_ligand-bd
IPR000536 - Nucl_hrmn_rcpt_lig-bd_core
IPR025900 - Nuclear_receptor_repeat
IPR001723 - Str_hrmn_rcpt

Pfam Domains:
PF00104 - Ligand-binding domain of nuclear hormone receptor
PF14046 - Nuclear receptor repeat

SCOP Domains:
48508 - Nuclear receptor ligand-binding domain

ModBase Predicted Comparative 3D Structure on P51843
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677 DNA binding
GO:0003707 steroid hormone receptor activity
GO:0003714 transcription corepressor activity
GO:0003723 RNA binding
GO:0004879 RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding
GO:0005515 protein binding
GO:0008134 transcription factor binding
GO:0019904 protein domain specific binding
GO:0032448 DNA hairpin binding
GO:0035258 steroid hormone receptor binding
GO:0042803 protein homodimerization activity
GO:0043565 sequence-specific DNA binding
GO:0050682 AF-2 domain binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006367 transcription initiation from RNA polymerase II promoter
GO:0006694 steroid biosynthetic process
GO:0007283 spermatogenesis
GO:0007530 sex determination
GO:0008104 protein localization
GO:0008406 gonad development
GO:0008584 male gonad development
GO:0021854 hypothalamus development
GO:0021983 pituitary gland development
GO:0030154 cell differentiation
GO:0030238 male sex determination
GO:0030325 adrenal gland development
GO:0030522 intracellular receptor signaling pathway
GO:0033144 negative regulation of intracellular steroid hormone receptor signaling pathway
GO:0033327 Leydig cell differentiation
GO:0035902 response to immobilization stress
GO:0043401 steroid hormone mediated signaling pathway
GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity
GO:0045596 negative regulation of cell differentiation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0060008 Sertoli cell differentiation

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005815 microtubule organizing center
GO:0016020 membrane
GO:0016607 nuclear speck
GO:0042788 polysomal ribosome
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  S74720 - DAX-1=DSS-AHC critical region on X chromosome, gene 1 [human, adrenal hypoplasia congenita, testis, fetal adrenal gland, mRNA Mutant, 2022 nt].
LP747430 - Sequence 17 from Patent WO2018009939.
JD327586 - Sequence 308610 from Patent EP1572962.
BC011564 - Homo sapiens nuclear receptor subfamily 0, group B, member 1, mRNA (cDNA clone MGC:20161 IMAGE:4637694), complete cds.
JD539096 - Sequence 520120 from Patent EP1572962.
HQ692832 - Homo sapiens nuclear receptor DAX1 (NR0B1) mRNA, complete cds.
KJ890647 - Synthetic construct Homo sapiens clone ccsbBroadEn_00041 NR0B1 gene, encodes complete protein.
KR710462 - Synthetic construct Homo sapiens clone CCSBHm_00012804 NR0B1 (NR0B1) mRNA, encodes complete protein.
KR710463 - Synthetic construct Homo sapiens clone CCSBHm_00012825 NR0B1 (NR0B1) mRNA, encodes complete protein.
AB464646 - Synthetic construct DNA, clone: pF1KB7043, Homo sapiens NR0B1 gene for nuclear receptor subfamily 0 group B member 1, without stop codon, in Flexi system.
MB486570 - JP 2019531699-A/17: METHODS FOR DIAGNOSING AND TREATING CANCER.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_carm-erPathway - CARM1 and Regulation of the Estrogen Receptor

Reactome (by CSHL, EBI, and GO)

Protein P51843 (Reactome details) participates in the following event(s):

R-HSA-376419 Formation of NR-MED1 Coactivator Complex
R-HSA-383280 Nuclear Receptor transcription pathway
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)
R-HSA-376419 Formation of NR-MED1 Coactivator Complex
R-HSA-383280 Nuclear Receptor transcription pathway
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: AHC, DAX1, ENST00000378970.1, ENST00000378970.2, ENST00000378970.3, ENST00000378970.4, NM_000475, NR0B1_HUMAN, P51843, Q96F69, uc318oqr.1, uc318oqr.2
UCSC ID: ENST00000378970.5_7
RefSeq Accession: NM_000475.5
Protein: P51843 (aka NR0B1_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene NR0B1:
ahc (NR0B1-Related Adrenal Hypoplasia Congenita)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.