Human Gene NR4A2 (ENST00000339562.9_7) from GENCODE V47lift37
  Description: nuclear receptor subfamily 4 group A member 2, transcript variant 1 (from RefSeq NM_006186.4)
Gencode Transcript: ENST00000339562.9_7
Gencode Gene: ENSG00000153234.16_14
Transcript (Including UTRs)
   Position: hg19 chr2:157,180,949-157,189,233 Size: 8,285 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg19 chr2:157,182,256-157,186,698 Size: 4,443 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:157,180,949-157,189,233)mRNA (may differ from genome)Protein (598 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCHuman Cortex Gene ExpressionMalacardsMGIOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: NR4A2_HUMAN
DESCRIPTION: RecName: Full=Nuclear receptor subfamily 4 group A member 2; AltName: Full=Immediate-early response protein NOT; AltName: Full=Orphan nuclear receptor NURR1; AltName: Full=Transcriptionally-inducible nuclear receptor;
FUNCTION: Transcriptional regulator which is important for the differentiation and maintenance of meso-diencephalic dopaminergic (mdDA) neurons during development. It is crucial for expression of a set of genes such as SLC6A3, SLC18A2, TH and DRD2 which are essential for development of mdDA neurons (By similarity).
SUBUNIT: Interacts with SFPQ, NCOR2, SIN3A and HADC1. The interaction with NCOR2 increases in the absence of PITX3 (By similarity).
INTERACTION: Q5H9L2:TCEAL5; NbExp=2; IntAct=EBI-2681738, EBI-2681773;
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Expressed in a number of cell lines of T-cell, B-cell and fibroblast origin. Strong expression in brain tissue.
DEVELOPMENTAL STAGE: Rapidly and only very transiently expressed after cell activation, during the G0-G1 transition of the cell cycle.
SIMILARITY: Belongs to the nuclear hormone receptor family. NR4 subfamily.
SIMILARITY: Contains 1 nuclear receptor DNA-binding domain.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/NR4A2";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NR4A2
Diseases sorted by gene-association score: parkinson disease, late-onset (6), arthritis (5), chondrosarcoma, extraskeletal myxoid (4), rheumatoid arthritis (2), schizophrenia (2), synucleinopathy (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 52.24 RPKM in Ovary
Total median expression: 355.31 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -117.80368-0.320 Picture PostScript Text
3' UTR -297.601307-0.228 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003070 - Nuc_orph_rcpt
IPR008946 - Nucl_hormone_rcpt_ligand-bd
IPR000536 - Nucl_hrmn_rcpt_lig-bd_core
IPR003073 - NURR_rcpt
IPR001723 - Str_hrmn_rcpt
IPR001628 - Znf_hrmn_rcpt
IPR013088 - Znf_NHR/GATA

Pfam Domains:
PF00104 - Ligand-binding domain of nuclear hormone receptor
PF00105 - Zinc finger, C4 type (two domains)

SCOP Domains:
48508 - Nuclear receptor ligand-binding domain
57716 - Glucocorticoid receptor-like (DNA-binding domain)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1OVL - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P43354
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0003707 steroid hormone receptor activity
GO:0004879 RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding
GO:0005515 protein binding
GO:0008013 beta-catenin binding
GO:0008270 zinc ion binding
GO:0035259 glucocorticoid receptor binding
GO:0042803 protein homodimerization activity
GO:0043565 sequence-specific DNA binding
GO:0046872 metal ion binding
GO:0046965 retinoid X receptor binding
GO:0046982 protein heterodimerization activity

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001666 response to hypoxia
GO:0001764 neuron migration
GO:0001975 response to amphetamine
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006367 transcription initiation from RNA polymerase II promoter
GO:0007165 signal transduction
GO:0007399 nervous system development
GO:0008344 adult locomotory behavior
GO:0009791 post-embryonic development
GO:0010467 gene expression
GO:0010468 regulation of gene expression
GO:0021952 central nervous system projection neuron axonogenesis
GO:0021953 central nervous system neuron differentiation
GO:0021986 habenula development
GO:0030182 neuron differentiation
GO:0030522 intracellular receptor signaling pathway
GO:0031668 cellular response to extracellular stimulus
GO:0034599 cellular response to oxidative stress
GO:0042053 regulation of dopamine metabolic process
GO:0042416 dopamine biosynthetic process
GO:0042417 dopamine metabolic process
GO:0042551 neuron maturation
GO:0043085 positive regulation of catalytic activity
GO:0043401 steroid hormone mediated signaling pathway
GO:0043524 negative regulation of neuron apoptotic process
GO:0043576 regulation of respiratory gaseous exchange
GO:0045444 fat cell differentiation
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0051866 general adaptation syndrome
GO:0060070 canonical Wnt signaling pathway
GO:0071376 cellular response to corticotropin-releasing hormone stimulus
GO:0071542 dopaminergic neuron differentiation
GO:1904948 midbrain dopaminergic neuron differentiation
GO:2001234 negative regulation of apoptotic signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0016607 nuclear speck


-  Descriptions from all associated GenBank mRNAs
  AK223625 - Homo sapiens mRNA for nuclear receptor subfamily 4, group A, member 2 isoform a variant, clone: FCC134G01.
MS997856 - Sequence 11 from Patent EP3159403.
X75918 - H.sapiens mRNA for NOT.
FW340026 - Screening.
JD567132 - Sequence 548156 from Patent EP1572962.
JD491126 - Sequence 472150 from Patent EP1572962.
JD099262 - Sequence 80286 from Patent EP1572962.
JD501316 - Sequence 482340 from Patent EP1572962.
S77154 - TINUR= NGFI-B/nur77 beta-type transcription factor homolog [human, T lymphoid cell line, PEER, mRNA, 2469 nt].
BC009288 - Homo sapiens nuclear receptor subfamily 4, group A, member 2, mRNA (cDNA clone MGC:14354 IMAGE:4298967), complete cds.
JD045585 - Sequence 26609 from Patent EP1572962.
AK299439 - Homo sapiens cDNA FLJ56147 complete cds, highly similar to Orphan nuclear receptor NR4A2.
AK291456 - Homo sapiens cDNA FLJ75035 complete cds, highly similar to Homo sapiens nuclear receptor subfamily 4, group A, member 2 (NR4A2), transcript variant 4, mRNA.
JD026180 - Sequence 7204 from Patent EP1572962.
JD028567 - Sequence 9591 from Patent EP1572962.
JD306941 - Sequence 287965 from Patent EP1572962.
BC066890 - Homo sapiens nuclear receptor subfamily 4, group A, member 2, mRNA (cDNA clone MGC:86960 IMAGE:4828460), complete cds.
JD024041 - Sequence 5065 from Patent EP1572962.
JD035891 - Sequence 16915 from Patent EP1572962.
JD491651 - Sequence 472675 from Patent EP1572962.
HQ692824 - Homo sapiens nuclear receptor related 1 (NR4A2) mRNA, complete cds.
HQ709176 - Homo sapiens nuclear receptor related 1 (NR4A2) mRNA, complete cds.
KJ897268 - Synthetic construct Homo sapiens clone ccsbBroadEn_06662 NR4A2 gene, encodes complete protein.
EU832662 - Synthetic construct Homo sapiens clone HAIB:100067691; DKFZo008G0331 nuclear receptor subfamily 4, group A, member 2 protein (NR4A2) gene, encodes complete protein.
EU832740 - Synthetic construct Homo sapiens clone HAIB:100067769; DKFZo004G0332 nuclear receptor subfamily 4, group A, member 2 protein (NR4A2) gene, encodes complete protein.
KU178238 - Homo sapiens nuclear receptor subfamily 4 group A member 2 isoform 1 (NR4A2) mRNA, partial cds.
KU178239 - Homo sapiens nuclear receptor subfamily 4 group A member 2 isoform 2 (NR4A2) mRNA, partial cds, alternatively spliced.
AB590645 - Synthetic construct DNA, clone: pFN21AB7818, Homo sapiens NR4A2 gene for nuclear receptor subfamily 4, group A, member 2, without stop codon, in Flexi system.
JD127313 - Sequence 108337 from Patent EP1572962.
JD310739 - Sequence 291763 from Patent EP1572962.
JD295845 - Sequence 276869 from Patent EP1572962.
JD098054 - Sequence 79078 from Patent EP1572962.
JD156677 - Sequence 137701 from Patent EP1572962.
FJ643485 - Homo sapiens orphan nuclear receptor NR4A2 isoform 2 (NR4A2) mRNA, partial cds, alternatively spliced.
AK309786 - Homo sapiens cDNA, FLJ99827.
JD403682 - Sequence 384706 from Patent EP1572962.
FJ643484 - Homo sapiens orphan nuclear receptor NR4A2 isoform 1 (NR4A2) mRNA, partial cds, alternatively spliced.
JD341953 - Sequence 322977 from Patent EP1572962.
JD406941 - Sequence 387965 from Patent EP1572962.
JD445351 - Sequence 426375 from Patent EP1572962.
JD054779 - Sequence 35803 from Patent EP1572962.
JD220977 - Sequence 202001 from Patent EP1572962.
JD406488 - Sequence 387512 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P43354 (Reactome details) participates in the following event(s):

R-HSA-376419 Formation of NR-MED1 Coactivator Complex
R-HSA-383280 Nuclear Receptor transcription pathway
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000339562.1, ENST00000339562.2, ENST00000339562.3, ENST00000339562.4, ENST00000339562.5, ENST00000339562.6, ENST00000339562.7, ENST00000339562.8, NM_006186, NOT, NR4A2_HUMAN, NURR1, P43354, Q16311, Q53RZ2, Q6NXU0, TINUR, uc317vka.1, uc317vka.2
UCSC ID: ENST00000339562.9_7
RefSeq Accession: NM_006186.4
Protein: P43354 (aka NR4A2_HUMAN or NR42_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.