Human Gene NUAK1 (ENST00000261402.7_7) from GENCODE V47lift37
  Description: NUAK family kinase 1 (from RefSeq NM_014840.3)
Gencode Transcript: ENST00000261402.7_7
Gencode Gene: ENSG00000074590.14_10
Transcript (Including UTRs)
   Position: hg19 chr12:106,457,123-106,532,732 Size: 75,610 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr12:106,460,580-106,532,431 Size: 71,852 Coding Exon Count: 7 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:106,457,123-106,532,732)mRNA (may differ from genome)Protein (661 aa)
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: NUAK1_HUMAN
DESCRIPTION: RecName: Full=NUAK family SNF1-like kinase 1; EC=2.7.11.1; AltName: Full=AMPK-related protein kinase 5; Short=ARK5; AltName: Full=Omphalocele kinase 1;
FUNCTION: Serine/threonine-protein kinase involved in various processes such as cell adhesion, regulation of cell ploidy and senescence, cell proliferation and tumor progression. Phosphorylates ATM, CASP6, LATS1, PPP1R12A and p53/TP53. Acts as a regulator of cellular senescence and cellular ploidy by mediating phosphorylation of 'Ser-464' of LATS1, thereby controlling its stability. Controls cell adhesion by regulating activity of the myosin protein phosphatase 1 (PP1) complex. Acts by mediating phosphorylation of PPP1R12A subunit of myosin PP1: phosphorylated PPP1R12A then interacts with 14-3-3, leading to reduced dephosphorylation of myosin MLC2 by myosin PP1. May be involved in DNA damage response: phosphorylates p53/TP53 at 'Ser-15' and 'Ser- 392' and is recruited to the CDKN1A/WAF1 promoter to participate to transcription activation by p53/TP53. May also act as a tumor malignancy-associated factor by promoting tumor invasion and metastasis under regulation and phosphorylation by AKT1. Suppresses Fas-induced apoptosis by mediating phosphorylation of CASP6, thereby suppressing the activation of the caspase and the subsequent cleavage of CFLAR.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium.
ENZYME REGULATION: Activated by phosphorylation on Thr-211. Activated by phosphorylation at Ser-600 AKT1 during glucose starvation; the relevance of such activation in normal cells is however unsure.
SUBUNIT: Interact (via GILK motif) with PPP1CB; the interaction is direct and bridges NUAK1 and PPP1R12A.
INTERACTION: P04637:TP53; NbExp=5; IntAct=EBI-1046789, EBI-366083;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm.
TISSUE SPECIFICITY: Expressed at high levels in heart and brain, and at lower levels in skeletal muscle, kidney, ovary, placenta, lung and liver. Highly up-regulated in colorectal cancer cell lines.
INDUCTION: Transcriptionally regulated by members of the MAF family.
DOMAIN: The GILK motif mediates interaction with PPP1CB.
PTM: Ubiquitinated with 'Lys-29'- and 'Lys-33'-linked polyubiquitins which appear to impede LKB1-mediated phosphorylation. Deubiquitinated by USP9X.
PTM: Phosphorylated at Thr-211 by STK11/LKB1 in complex with STE20-related adapter-alpha (STRADA) pseudo kinase and CAB39. Not dephosphorylated by the myosin PP1 complex when regulating its activity, due to the presence of PPP1R12A, which prevents myosin PP1 from dephosphorylating NUAK1. Phosphorylated by STK38L upon stimulation with IGF1.
SIMILARITY: Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=BAA25463.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NUAK1
Diseases sorted by gene-association score: omphalocele (8)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 21.91 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 326.83 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -127.10301-0.422 Picture PostScript Text
3' UTR -1108.903457-0.321 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF01163 - RIO1 family
PF06293 - Lipopolysaccharide kinase (Kdo/WaaP) family
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on O60285
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0002039 p53 binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006468 protein phosphorylation
GO:0006974 cellular response to DNA damage stimulus
GO:0007155 cell adhesion
GO:0016310 phosphorylation
GO:0030155 regulation of cell adhesion
GO:0035507 regulation of myosin-light-chain-phosphatase activity
GO:0035556 intracellular signal transduction
GO:0042127 regulation of cell proliferation
GO:1901796 regulation of signal transduction by p53 class mediator
GO:2000772 regulation of cellular senescence

Cellular Component:
GO:0001650 fibrillar center
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0015630 microtubule cytoskeleton


-  Descriptions from all associated GenBank mRNAs
  BC152462 - Homo sapiens NUAK family, SNF1-like kinase, 1, mRNA (cDNA clone MGC:176719 IMAGE:8862598), complete cds.
AK027302 - Homo sapiens cDNA FLJ14396 fis, clone HEMBA1003291, moderately similar to SNF1-RELATED PROTEIN KINASE KIN10 (EC 2.7.1.-).
AB011109 - Homo sapiens KIAA0537 mRNA for KIAA0537 protein.
JD558700 - Sequence 539724 from Patent EP1572962.
JD174593 - Sequence 155617 from Patent EP1572962.
JD181663 - Sequence 162687 from Patent EP1572962.
JD357669 - Sequence 338693 from Patent EP1572962.
JD556539 - Sequence 537563 from Patent EP1572962.
JD537504 - Sequence 518528 from Patent EP1572962.
JD410802 - Sequence 391826 from Patent EP1572962.
JD099270 - Sequence 80294 from Patent EP1572962.
JD161080 - Sequence 142104 from Patent EP1572962.
JD134471 - Sequence 115495 from Patent EP1572962.
JD563524 - Sequence 544548 from Patent EP1572962.
JD316183 - Sequence 297207 from Patent EP1572962.
JD414143 - Sequence 395167 from Patent EP1572962.
JD101463 - Sequence 82487 from Patent EP1572962.
JD272525 - Sequence 253549 from Patent EP1572962.
JD200772 - Sequence 181796 from Patent EP1572962.
JD315578 - Sequence 296602 from Patent EP1572962.
JD395201 - Sequence 376225 from Patent EP1572962.
JD253749 - Sequence 234773 from Patent EP1572962.
JD109815 - Sequence 90839 from Patent EP1572962.
JD506769 - Sequence 487793 from Patent EP1572962.
JD279637 - Sequence 260661 from Patent EP1572962.
JD089667 - Sequence 70691 from Patent EP1572962.
JD234691 - Sequence 215715 from Patent EP1572962.
JD066565 - Sequence 47589 from Patent EP1572962.
JD327647 - Sequence 308671 from Patent EP1572962.
JD502554 - Sequence 483578 from Patent EP1572962.
JD562606 - Sequence 543630 from Patent EP1572962.
JD061049 - Sequence 42073 from Patent EP1572962.
JD350312 - Sequence 331336 from Patent EP1572962.
JD133463 - Sequence 114487 from Patent EP1572962.
JD492528 - Sequence 473552 from Patent EP1572962.
JD542458 - Sequence 523482 from Patent EP1572962.
JD239478 - Sequence 220502 from Patent EP1572962.
JD085222 - Sequence 66246 from Patent EP1572962.
JD270883 - Sequence 251907 from Patent EP1572962.
JD249063 - Sequence 230087 from Patent EP1572962.
JD205034 - Sequence 186058 from Patent EP1572962.
JD445063 - Sequence 426087 from Patent EP1572962.
JD324588 - Sequence 305612 from Patent EP1572962.
JD101501 - Sequence 82525 from Patent EP1572962.
AK289992 - Homo sapiens cDNA FLJ77269 complete cds, highly similar to Homo sapiens NUAK family, SNF1-like kinase, 1 (NUAK1), mRNA.
JD474093 - Sequence 455117 from Patent EP1572962.
JD164905 - Sequence 145929 from Patent EP1572962.
JD302377 - Sequence 283401 from Patent EP1572962.
JD274983 - Sequence 256007 from Patent EP1572962.
JD409024 - Sequence 390048 from Patent EP1572962.
JD408557 - Sequence 389581 from Patent EP1572962.
JD109012 - Sequence 90036 from Patent EP1572962.
JD176012 - Sequence 157036 from Patent EP1572962.
JD540454 - Sequence 521478 from Patent EP1572962.
BC160165 - Synthetic construct Homo sapiens clone IMAGE:100064197, MGC:193280 NUAK family, SNF1-like kinase, 1 (NUAK1) mRNA, encodes complete protein.
AB383901 - Synthetic construct DNA, clone: pF1KSDA0537, Homo sapiens NUAK1 gene for NUAK family SNF1-like kinase 1, complete cds, without stop codon, in Flexi system.
JD523130 - Sequence 504154 from Patent EP1572962.
JD257341 - Sequence 238365 from Patent EP1572962.
JD532552 - Sequence 513576 from Patent EP1572962.
JD128948 - Sequence 109972 from Patent EP1572962.
JD407019 - Sequence 388043 from Patent EP1572962.
JD460212 - Sequence 441236 from Patent EP1572962.
JD056242 - Sequence 37266 from Patent EP1572962.
JD392098 - Sequence 373122 from Patent EP1572962.
JD189433 - Sequence 170457 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O60285 (Reactome details) participates in the following event(s):

R-HSA-6805035 TP53 binds STK11 and NUAK1
R-HSA-3222020 NUAK1 phosphorylates TP53
R-HSA-3222006 STK11 (LKB1) phosphorylates NUAK1
R-HSA-6804756 Regulation of TP53 Activity through Phosphorylation
R-HSA-5633007 Regulation of TP53 Activity
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: A7MD39, ARK5, ENST00000261402.1, ENST00000261402.2, ENST00000261402.3, ENST00000261402.4, ENST00000261402.5, ENST00000261402.6, KIAA0537, NM_014840, NUAK1_HUMAN, O60285, OMPHK1, Q96KA8, uc317gpm.1, uc317gpm.2
UCSC ID: ENST00000261402.7_7
RefSeq Accession: NM_014840.3
Protein: O60285 (aka NUAK1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.