Human Gene NUDC (ENST00000321265.10_4) from GENCODE V47lift37
  Description: nuclear distribution C, dynein complex regulator (from RefSeq NM_006600.4)
Gencode Transcript: ENST00000321265.10_4
Gencode Gene: ENSG00000090273.14_8
Transcript (Including UTRs)
   Position: hg19 chr1:27,248,234-27,273,362 Size: 25,129 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg19 chr1:27,248,340-27,272,672 Size: 24,333 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:27,248,234-27,273,362)mRNA (may differ from genome)Protein (331 aa)
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-  Comments and Description Text from UniProtKB
  ID: NUDC_HUMAN
DESCRIPTION: RecName: Full=Nuclear migration protein nudC; AltName: Full=Nuclear distribution protein C homolog;
FUNCTION: Plays a role in neurogenesis and neuronal migration (By similarity). Necessary for correct formation of mitotic spindles and chromosome separation during mitosis. Necessary for cytokinesis and cell proliferation.
SUBUNIT: Binds PLK1. Binds PAFAH1B1 (By similarity). Part of a complex containing PLK1, NUDC, dynein and dynactin.
INTERACTION: P52429:DGKE; NbExp=1; IntAct=EBI-357298, EBI-1057499;
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton. Nucleus. Note=In a filamentous pattern adjacent to the nucleus of migrating cerebellar granule cells. Colocalizes with tubulin and dynein and with the microtubule organizing center. Distributed throughout the cytoplasm of non-migrating cells. A small proportion is nuclear, in a punctate pattern.
TISSUE SPECIFICITY: Ubiquitous. Highly expressed in fetal liver, kidney, lung and brain. Highly expressed in adult pancreas, kidney, skeletal muscle, liver, lung, placenta, prostate, brain and heart.
INDUCTION: Up-regulated in actively dividing hematopoietic precursor cells. Up-regulated in cultured erythroleukemia TF-1 cells by granulocyte-macrophage colony-stimulating factor. Strongly down-regulated during maturation of erythroid precursor cells.
PTM: Reversibly phosphorylated on serine residues during the M phase of the cell cycle. Phosphorylation on Ser-274 and Ser-326 is necessary for correct formation of mitotic spindles and chromosome separation during mitosis. Phosphorylated by PLK and other kinases.
SIMILARITY: Belongs to the nudC family.
SIMILARITY: Contains 1 CS domain.
SEQUENCE CAUTION: Sequence=BAA76628.1; Type=Frameshift; Positions=140, 231, 273; Sequence=CAI13560.1; Type=Erroneous gene model prediction; Sequence=CAI13563.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NUDC
Diseases sorted by gene-association score: lissencephaly (10)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 68.49 RPKM in Adrenal Gland
Total median expression: 2027.91 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -45.10106-0.425 Picture PostScript Text
3' UTR -253.60690-0.368 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007052 - CS-like_domain
IPR017447 - CS_domain
IPR008978 - HSP20-like_chaperone
IPR025934 - NudC_N_dom

Pfam Domains:
PF04969 - CS domain
PF14050 - N-terminal conserved domain of Nudc.
PF16273 - Nuclear distribution C domain

SCOP Domains:
49764 - HSP20-like chaperones

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3QOR - X-ray


ModBase Predicted Comparative 3D Structure on Q9Y266
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
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 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0045296 cadherin binding
GO:0051082 unfolded protein binding

Biological Process:
GO:0006457 protein folding
GO:0007049 cell cycle
GO:0007275 multicellular organism development
GO:0008283 cell proliferation
GO:0051301 cell division

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005874 microtubule


-  Descriptions from all associated GenBank mRNAs
  BC007280 - Homo sapiens nuclear distribution gene C homolog (A. nidulans), mRNA (cDNA clone MGC:15624 IMAGE:3343588), complete cds.
BC015153 - Homo sapiens nuclear distribution gene C homolog (A. nidulans), mRNA (cDNA clone MGC:10006 IMAGE:3883328), complete cds.
AL136725 - Homo sapiens mRNA; cDNA DKFZp566P0446 (from clone DKFZp566P0446).
AF125465 - Homo sapiens nuclear distribution protein (NUDC) mRNA, complete cds.
AF100760 - Homo sapiens MNUDC protein mRNA, complete cds.
AF086922 - Homo sapiens SIG-92 mRNA, complete cds.
BC021139 - Homo sapiens nuclear distribution gene C homolog (A. nidulans), mRNA (cDNA clone MGC:32082 IMAGE:4871007), complete cds.
AF241788 - Homo sapiens NPD011 (NPD011) mRNA, complete cds.
AB019408 - Homo sapiens mRNA, expressed in fibroblasts of periodontal ligament, complete cds, clone:PDL-48.
BC006147 - Homo sapiens nuclear distribution gene C homolog (A. nidulans), mRNA (cDNA clone MGC:13100 IMAGE:3954220), complete cds.
BC003132 - Homo sapiens nuclear distribution gene C homolog (A. nidulans), mRNA (cDNA clone MGC:3526 IMAGE:2958251), complete cds.
AF130736 - Homo sapiens nuclear distribution protein C homolog (NUDC) mRNA, complete cds.
BC002399 - Homo sapiens nuclear distribution gene C homolog (A. nidulans), mRNA (cDNA clone MGC:8497 IMAGE:2822167), complete cds.
AM392722 - Synthetic construct Homo sapiens clone IMAGE:100002449 for hypothetical protein (NUDC gene).
AM393251 - Synthetic construct Homo sapiens clone IMAGE:100002450 for hypothetical protein (NUDC gene).
AB463146 - Synthetic construct DNA, clone: pF1KB8625, Homo sapiens NUDC gene for nuclear distribution gene C homolog, without stop codon, in Flexi system.
KJ898275 - Synthetic construct Homo sapiens clone ccsbBroadEn_07669 NUDC gene, encodes complete protein.
JD461768 - Sequence 442792 from Patent EP1572962.
JD519579 - Sequence 500603 from Patent EP1572962.
JD294601 - Sequence 275625 from Patent EP1572962.
JD120829 - Sequence 101853 from Patent EP1572962.
JD166824 - Sequence 147848 from Patent EP1572962.
JD475772 - Sequence 456796 from Patent EP1572962.
JD204146 - Sequence 185170 from Patent EP1572962.
JD111102 - Sequence 92126 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9Y266 (Reactome details) participates in the following event(s):

R-HSA-156682 Regulation of NUDC by phosphorylation
R-HSA-141409 Mad1 binds kinetochore
R-HSA-375302 Kinetochore capture of astral microtubules
R-HSA-5666129 CDC42:GTP recruits DIAPH2-2 to kinetochores
R-HSA-5666169 Kinetochore capture of astral microtubules is positively regulated by CDC42:GTP:p-S196-DIAPH2-2
R-HSA-141431 MAD2 associates with the Mad1 kinetochore complex
R-HSA-141439 Release of activated MAD2 from kinetochores
R-HSA-2467811 Separation of sister chromatids
R-HSA-2467809 ESPL1 (Separase) cleaves centromeric cohesin
R-HSA-5666160 AURKB phosphorylates DIAPH2-2 at kinetochores
R-HSA-141422 MAD2 converted to an inhibitory state via interaction with Mad1
R-HSA-1638821 PP2A-B56 dephosphorylates centromeric cohesin
R-HSA-1638803 Phosphorylation of cohesin by PLK1 at centromeres
R-HSA-2468287 CDK1 phosphorylates CDCA5 (Sororin) at centromeres
R-HSA-68884 Mitotic Telophase/Cytokinesis
R-HSA-68886 M Phase
R-HSA-141444 Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
R-HSA-68877 Mitotic Prometaphase
R-HSA-5663220 RHO GTPases Activate Formins
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-2500257 Resolution of Sister Chromatid Cohesion
R-HSA-2467813 Separation of Sister Chromatids
R-HSA-141424 Amplification of signal from the kinetochores
R-HSA-195258 RHO GTPase Effectors
R-HSA-1640170 Cell Cycle
R-HSA-68882 Mitotic Anaphase
R-HSA-69618 Mitotic Spindle Checkpoint
R-HSA-194315 Signaling by Rho GTPases
R-HSA-2555396 Mitotic Metaphase and Anaphase
R-HSA-69620 Cell Cycle Checkpoints
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000321265.1, ENST00000321265.2, ENST00000321265.3, ENST00000321265.4, ENST00000321265.5, ENST00000321265.6, ENST00000321265.7, ENST00000321265.8, ENST00000321265.9, NM_006600, NUDC_HUMAN, Q5QP31, Q5QP35, Q9H0N2, Q9Y266, Q9Y2B6, uc317raj.1, uc317raj.2
UCSC ID: ENST00000321265.10_4
RefSeq Accession: NM_006600.4
Protein: Q9Y266 (aka NUDC_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.