Human Gene NUP160 (ENST00000378460.7_10) from GENCODE V47lift37
  Description: nucleoporin 160, transcript variant 3 (from RefSeq NR_134636.3)
Gencode Transcript: ENST00000378460.7_10
Gencode Gene: ENSG00000030066.14_16
Transcript (Including UTRs)
   Position: hg19 chr11:47,799,670-47,869,902 Size: 70,233 Total Exon Count: 36 Strand: -
Coding Region
   Position: hg19 chr11:47,800,657-47,869,870 Size: 69,214 Coding Exon Count: 36 

Page IndexSequence and LinksPrimersCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:47,799,670-47,869,902)mRNA (may differ from genome)Protein (1402 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIOMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 12.05 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 269.98 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.5032-0.391 Picture PostScript Text
3' UTR -220.20987-0.223 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Descriptions from all associated GenBank mRNAs
  CR749846 - Homo sapiens mRNA; cDNA DKFZp686M14102 (from clone DKFZp686M14102).
BX647634 - Homo sapiens mRNA; cDNA DKFZp451B066 (from clone DKFZp451B066).
AL832029 - Homo sapiens mRNA; cDNA DKFZp451O194 (from clone DKFZp451O194).
D83781 - Homo sapiens Nup160 gene for nuclear pore protein, partial cds.
AK304308 - Homo sapiens cDNA FLJ61551 complete cds, highly similar to Homo sapiens nucleoporin 160kDa (NUP160), mRNA.
BC125227 - Homo sapiens nucleoporin 160kDa, mRNA (cDNA clone MGC:150678 IMAGE:40124592), complete cds.
BC125228 - Homo sapiens nucleoporin 160kDa, mRNA (cDNA clone MGC:150679 IMAGE:40124593), complete cds.
AB385295 - Synthetic construct DNA, clone: pF1KA0197, Homo sapiens NUP160 gene for nucleoporin 160kDa, complete cds, without stop codon, in Flexi system.
AK302396 - Homo sapiens cDNA FLJ51618 complete cds, highly similar to Nuclear pore complex protein Nup160.
AL832813 - Homo sapiens mRNA; cDNA DKFZp667B1624 (from clone DKFZp667B1624).
BC008700 - Homo sapiens nucleoporin 160kDa, mRNA (cDNA clone IMAGE:2960535), partial cds.
JD559736 - Sequence 540760 from Patent EP1572962.
JD327096 - Sequence 308120 from Patent EP1572962.
JD376568 - Sequence 357592 from Patent EP1572962.
JD305248 - Sequence 286272 from Patent EP1572962.
JD519287 - Sequence 500311 from Patent EP1572962.
JD324239 - Sequence 305263 from Patent EP1572962.
JD066431 - Sequence 47455 from Patent EP1572962.
JD174901 - Sequence 155925 from Patent EP1572962.
AK026236 - Homo sapiens cDNA: FLJ22583 fis, clone HSI02596.
BC009822 - Homo sapiens nucleoporin 160kDa, mRNA (cDNA clone IMAGE:3954338), complete cds.
KJ906085 - Synthetic construct Homo sapiens clone ccsbBroadEn_15755 NUP160 gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A8V8NBT1, A0A8V8NBT1_HUMAN, ENST00000378460.1, ENST00000378460.2, ENST00000378460.3, ENST00000378460.4, ENST00000378460.5, ENST00000378460.6, NR_134636, NUP160 , uc318ohq.1, uc318ohq.2
UCSC ID: ENST00000378460.7_10
RefSeq Accession: NM_015231.3

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.