Human Gene OAS2 (ENST00000392583.7_6) from GENCODE V47lift37
  Description: 2'-5'-oligoadenylate synthetase 2, transcript variant 2 (from RefSeq NM_002535.3)
Gencode Transcript: ENST00000392583.7_6
Gencode Gene: ENSG00000111335.14_15
Transcript (Including UTRs)
   Position: hg19 chr12:113,416,324-113,449,528 Size: 33,205 Total Exon Count: 10 Strand: +
Coding Region
   Position: hg19 chr12:113,416,414-113,447,060 Size: 30,647 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:113,416,324-113,449,528)mRNA (may differ from genome)Protein (687 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
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-  Comments and Description Text from UniProtKB
  ID: OAS2_HUMAN
DESCRIPTION: RecName: Full=2'-5'-oligoadenylate synthase 2; Short=(2-5')oligo(A) synthase 2; Short=2-5A synthase 2; EC=2.7.7.-; AltName: Full=p69 OAS / p71 OAS; Short=p69OAS / p71OAS;
FUNCTION: Interferon-induced, dsRNA-activated antiviral enzyme which plays a critical role in cellular innate antiviral response. In addition, it may also play a role in other cellular processes such as apoptosis, cell growth, differentiation and gene regulation. Synthesizes higher oligomers of 2'-5'-oligoadenylates (2-5A) from ATP which then bind to the inactive monomeric form of ribonuclease L (RNase L) leading to its dimerization and subsequent activation. Activation of RNase L leads to degradation of cellular as well as viral RNA, resulting in the inhibition of protein synthesis, thus terminating viral replication. Can mediate the antiviral effect via the classical RNase L-dependent pathway or an alternative antiviral pathway independent of RNase L.
CATALYTIC ACTIVITY: Binds double-stranded RNA and polymerizes ATP into PPP(A2'P5'A)N oligomers, which activate the latent RNase L that, when activated, cleaves single-stranded RNAs.
COFACTOR: Magnesium (Potential).
ENZYME REGULATION: Produced as a latent enzyme which is activated by dsRNA generated during the course of viral infection. The dsRNA activator must be at least 15 nucleotides long, and no modification of the 2'-hydroxyl group is tolerated. ssRNA or dsDNA do not act as activators.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=2.1 mM for ATP;
SUBUNIT: Homodimer.
SUBCELLULAR LOCATION: Cytoplasm. Cytoplasm, perinuclear region. Mitochondrion. Nucleus. Microsome. Endoplasmic reticulum. Note=Associated with different subcellular fractions such as mitochondrial, nuclear, and rough/smooth microsomal fractions.
INDUCTION: By type I interferon (IFN) and viruses.
PTM: Myristoylation is not essential for its activity.
PTM: Glycosylated. Glycosylation is essential for its activity.
SIMILARITY: Belongs to the 2-5A synthase family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: OAS2
Diseases sorted by gene-association score: microphthalmia with limb anomalies (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 84.47 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 190.30 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -24.3090-0.270 Picture PostScript Text
3' UTR -677.102468-0.274 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006117 - 2-5-oligoadenylate_synth_CS
IPR006116 - 2-5-oligoadenylate_synth_N
IPR018952 - 2-5-oligoAdlate_synth_1_dom2/C
IPR026774 - 2-5A_synthase
IPR002934 - Nucleotidyltransferase

Pfam Domains:
PF01909 - Nucleotidyltransferase domain
PF10421 - 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus

SCOP Domains:
81631 - PAP/OAS1 substrate-binding domain
47807 - 5' to 3' exonuclease, C-terminal subdomain
81301 - Nucleotidyltransferase
57756 - Retrovirus zinc finger-like domains

ModBase Predicted Comparative 3D Structure on P29728
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0001730 2'-5'-oligoadenylate synthetase activity
GO:0003723 RNA binding
GO:0003725 double-stranded RNA binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016740 transferase activity
GO:0016779 nucleotidyltransferase activity
GO:0046872 metal ion binding

Biological Process:
GO:0002376 immune system process
GO:0006139 nucleobase-containing compound metabolic process
GO:0006401 RNA catabolic process
GO:0006955 immune response
GO:0009615 response to virus
GO:0045087 innate immune response
GO:0051607 defense response to virus
GO:0060333 interferon-gamma-mediated signaling pathway
GO:0060337 type I interferon signaling pathway
GO:1903487 regulation of lactation

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016020 membrane
GO:0043231 intracellular membrane-bounded organelle
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  LF384012 - JP 2014500723-A/191515: Polycomb-Associated Non-Coding RNAs.
BC010625 - Homo sapiens 2'-5'-oligoadenylate synthetase 2, 69/71kDa, mRNA (cDNA clone IMAGE:3854948), complete cds.
HI119103 - Sequence 13 from Patent EP1929042.
BC053870 - Homo sapiens 2'-5'-oligoadenylate synthetase 2, 69/71kDa, mRNA (cDNA clone IMAGE:5576826), complete cds.
BC023637 - Homo sapiens 2'-5'-oligoadenylate synthetase 2, 69/71kDa, mRNA (cDNA clone IMAGE:4849691), complete cds.
AK292906 - Homo sapiens cDNA FLJ75060 complete cds, highly similar to Homo sapiens 2'-5'-oligoadenylate synthetase 2, 69/71kDa, mRNA.
BC069052 - Homo sapiens 2'-5'-oligoadenylate synthetase 2, 69/71kDa, mRNA (cDNA clone IMAGE:4555348), complete cds.
BC049215 - Homo sapiens 2'-5'-oligoadenylate synthetase 2, 69/71kDa, mRNA (cDNA clone MGC:51939 IMAGE:5517804), complete cds.
AK292796 - Homo sapiens cDNA FLJ78540 complete cds, highly similar to Homo sapiens 2'-5'-oligoadenylate synthetase 2, 69/71kDa (OAS2), transcript variant 2, mRNA.
HI119093 - Sequence 3 from Patent EP1929042.
M87284 - Human 69 kDa 2'5' oligoadenylate synthetase (P69 2-5A synthetase) mRNA, complete cds.
HI119094 - Sequence 4 from Patent EP1929042.
LQ878898 - Sequence 13 from Patent WO2018154075.
M87434 - Human 71 kDa 2'5' oligoadenylate synthetase (p69 2-5A synthetase) mRNA, complete cds.
CU690608 - Synthetic construct Homo sapiens gateway clone IMAGE:100021501 5' read OAS2 mRNA.
KJ897270 - Synthetic construct Homo sapiens clone ccsbBroadEn_06664 OAS2 gene, encodes complete protein.
AB590925 - Synthetic construct DNA, clone: pFN21AE2065, Homo sapiens OAS2 gene for 2'-5'-oligoadenylate synthetase 2, 69/71kDa, without stop codon, in Flexi system.
JD221283 - Sequence 202307 from Patent EP1572962.
JD040205 - Sequence 21229 from Patent EP1572962.
JD320923 - Sequence 301947 from Patent EP1572962.
JD123422 - Sequence 104446 from Patent EP1572962.
JD386552 - Sequence 367576 from Patent EP1572962.
JD300916 - Sequence 281940 from Patent EP1572962.
JD166458 - Sequence 147482 from Patent EP1572962.
JD490297 - Sequence 471321 from Patent EP1572962.
JD520268 - Sequence 501292 from Patent EP1572962.
JD121022 - Sequence 102046 from Patent EP1572962.
JD414178 - Sequence 395202 from Patent EP1572962.
JD438463 - Sequence 419487 from Patent EP1572962.
JD232813 - Sequence 213837 from Patent EP1572962.
JD555181 - Sequence 536205 from Patent EP1572962.
JD153513 - Sequence 134537 from Patent EP1572962.
JD342562 - Sequence 323586 from Patent EP1572962.
AF074990 - Homo sapiens full length insert cDNA YH85A11.
JD430635 - Sequence 411659 from Patent EP1572962.
MA619589 - JP 2018138019-A/191515: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P29728 (Reactome details) participates in the following event(s):

R-HSA-909733 Interferon alpha/beta signaling
R-HSA-877300 Interferon gamma signaling
R-HSA-913531 Interferon Signaling
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A8K9T1, ENST00000392583.1, ENST00000392583.2, ENST00000392583.3, ENST00000392583.4, ENST00000392583.5, ENST00000392583.6, NM_002535, OAS2 , OAS2_HUMAN, P29728, Q6PJ33, Q86XX8, uc318vfe.1, uc318vfe.2
UCSC ID: ENST00000392583.7_6
RefSeq Accession: NM_002535.3
Protein: P29728 (aka OAS2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.