Human Gene OXSR1 (ENST00000311806.8_4) from GENCODE V47lift37
  Description: oxidative stress responsive kinase 1 (from RefSeq NM_005109.3)
Gencode Transcript: ENST00000311806.8_4
Gencode Gene: ENSG00000172939.9_7
Transcript (Including UTRs)
   Position: hg19 chr3:38,207,028-38,296,975 Size: 89,948 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg19 chr3:38,207,368-38,294,382 Size: 87,015 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:38,207,028-38,296,975)mRNA (may differ from genome)Protein (527 aa)
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: OXSR1_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase OSR1; EC=2.7.11.1; AltName: Full=Oxidative stress-responsive 1 protein;
FUNCTION: Regulates downstream kinases in response to environmental stress. May also have a function in regulating the actin cytoskeleton.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium.
ENZYME REGULATION: By autophosphorylation on threonine.
SUBUNIT: Binds to and phosphorylates PAK1. Interacts with chloride channel proteins SLC12A6 isoform 2, SLC12A1 and SLC12A2 but not with SLC12A4 and SLC12A7, possibly establishing sensor/signaling modules that initiate the cellular response to environmental stress. Binds to and phosphorylates RELL1, RELL2 AND RELT.
SUBCELLULAR LOCATION: Cytoplasm.
TISSUE SPECIFICITY: Ubiquitously expressed in all tissue examined.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
SIMILARITY: Belongs to the protein kinase superfamily. STE Ser/Thr protein kinase family. STE20 subfamily.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=AAP97192.1; Type=Erroneous initiation; Sequence=BAA83053.2; Type=Frameshift; Positions=63;
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/oxsr1/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 24.85 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 524.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -191.50340-0.563 Picture PostScript Text
3' UTR -757.202593-0.292 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR024678 - Kinase_OSR1/WNK_CCT
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom

Pfam Domains:
PF00069 - Protein kinase domain
PF03109 - ABC1 atypical kinase-like domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF12202 - Oxidative-stress-responsive kinase 1 C-terminal domain

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2V3S - X-ray MuPIT 2VWI - X-ray MuPIT 3DAK - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O95747
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0042802 identical protein binding
GO:0046872 metal ion binding

Biological Process:
GO:0006468 protein phosphorylation
GO:0006979 response to oxidative stress
GO:0007346 regulation of mitotic cell cycle
GO:0016310 phosphorylation
GO:0018107 peptidyl-threonine phosphorylation
GO:0023014 signal transduction by protein phosphorylation
GO:0031098 stress-activated protein kinase signaling cascade
GO:0032147 activation of protein kinase activity
GO:0035556 intracellular signal transduction
GO:0042981 regulation of apoptotic process
GO:0071476 cellular hypotonic response
GO:1901017 negative regulation of potassium ion transmembrane transporter activity
GO:1901380 negative regulation of potassium ion transmembrane transport

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AB017642 - Homo sapiens OSR1 mRNA for oxidative-stress responsive 1, complete cds.
BC008726 - Homo sapiens oxidative-stress responsive 1, mRNA (cDNA clone MGC:1572 IMAGE:3163379), complete cds.
AB029024 - Homo sapiens mRNA for KIAA1101 protein, partial cds.
AB384561 - Synthetic construct DNA, clone: pF1KA1101, Homo sapiens OXSR1 gene for serine/threonine-protein kinase OSR1, complete cds, without stop codon, in Flexi system.
DQ896584 - Synthetic construct Homo sapiens clone IMAGE:100011044; FLH195661.01L; RZPDo839E11151D oxidative-stress responsive 1 (OXSR1) gene, encodes complete protein.
DQ893255 - Synthetic construct clone IMAGE:100005885; FLH195665.01X; RZPDo839E11152D oxidative-stress responsive 1 (OXSR1) gene, encodes complete protein.
KJ905385 - Synthetic construct Homo sapiens clone ccsbBroadEn_14949 OXSR1 gene, encodes complete protein.
AF087893 - Homo sapiens DCHT2 mRNA, complete cds.
JD218484 - Sequence 199508 from Patent EP1572962.
AK309634 - Homo sapiens cDNA, FLJ99675.
JD271343 - Sequence 252367 from Patent EP1572962.
JD336368 - Sequence 317392 from Patent EP1572962.
CU679061 - Synthetic construct Homo sapiens gateway clone IMAGE:100020333 5' read OXSR1 mRNA.
EF491806 - Homo sapiens clone OXSR1 mRNA, partial sequence; alternatively spliced.
EF491821 - Homo sapiens clone OXSR1 mRNA, partial sequence; alternatively spliced.
JD076405 - Sequence 57429 from Patent EP1572962.
JD037744 - Sequence 18768 from Patent EP1572962.
JD241620 - Sequence 222644 from Patent EP1572962.
JD166424 - Sequence 147448 from Patent EP1572962.
JD261362 - Sequence 242386 from Patent EP1572962.
JD164138 - Sequence 145162 from Patent EP1572962.
JD206742 - Sequence 187766 from Patent EP1572962.
JD248904 - Sequence 229928 from Patent EP1572962.
JD492576 - Sequence 473600 from Patent EP1572962.
DQ601166 - Homo sapiens piRNA piR-39232, complete sequence.
JD255241 - Sequence 236265 from Patent EP1572962.
JD371934 - Sequence 352958 from Patent EP1572962.
JD074519 - Sequence 55543 from Patent EP1572962.
JD391354 - Sequence 372378 from Patent EP1572962.
JD516734 - Sequence 497758 from Patent EP1572962.
JD145937 - Sequence 126961 from Patent EP1572962.
JD245145 - Sequence 226169 from Patent EP1572962.
JD433642 - Sequence 414666 from Patent EP1572962.
JD179874 - Sequence 160898 from Patent EP1572962.
JD399852 - Sequence 380876 from Patent EP1572962.
JD164919 - Sequence 145943 from Patent EP1572962.
JD271901 - Sequence 252925 from Patent EP1572962.
JD528028 - Sequence 509052 from Patent EP1572962.
JD231454 - Sequence 212478 from Patent EP1572962.
JD069137 - Sequence 50161 from Patent EP1572962.
JD260522 - Sequence 241546 from Patent EP1572962.
JD266808 - Sequence 247832 from Patent EP1572962.
JD082028 - Sequence 63052 from Patent EP1572962.
JD112965 - Sequence 93989 from Patent EP1572962.
JD274277 - Sequence 255301 from Patent EP1572962.
JD090961 - Sequence 71985 from Patent EP1572962.
JD277390 - Sequence 258414 from Patent EP1572962.
JD343160 - Sequence 324184 from Patent EP1572962.
JD445435 - Sequence 426459 from Patent EP1572962.
JD037782 - Sequence 18806 from Patent EP1572962.
JD446017 - Sequence 427041 from Patent EP1572962.
JD203617 - Sequence 184641 from Patent EP1572962.
JD247880 - Sequence 228904 from Patent EP1572962.
JD023398 - Sequence 4422 from Patent EP1572962.
JD029156 - Sequence 10180 from Patent EP1572962.
JD063501 - Sequence 44525 from Patent EP1572962.
JD316708 - Sequence 297732 from Patent EP1572962.
JD437707 - Sequence 418731 from Patent EP1572962.
JD118099 - Sequence 99123 from Patent EP1572962.
JD328144 - Sequence 309168 from Patent EP1572962.
JD328344 - Sequence 309368 from Patent EP1572962.
JD099669 - Sequence 80693 from Patent EP1572962.
JD086346 - Sequence 67370 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000311806.1, ENST00000311806.2, ENST00000311806.3, ENST00000311806.4, ENST00000311806.5, ENST00000311806.6, ENST00000311806.7, KIAA1101 , NM_005109, O95747, OSR1 , OXSR1 , OXSR1_HUMAN, Q3LR53, Q7Z501, Q9UPQ1, uc317pbs.1, uc317pbs.2
UCSC ID: ENST00000311806.8_4
RefSeq Accession: NM_005109.3
Protein: O95747 (aka OXSR1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.