Human Gene PAK1IP1 (ENST00000379568.4_4) from GENCODE V47lift37
  Description: PAK1 interacting protein 1 (from RefSeq NM_017906.3)
Gencode Transcript: ENST00000379568.4_4
Gencode Gene: ENSG00000111845.5_7
Transcript (Including UTRs)
   Position: hg19 chr6:10,695,205-10,710,015 Size: 14,811 Total Exon Count: 10 Strand: +
Coding Region
   Position: hg19 chr6:10,695,219-10,709,685 Size: 14,467 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:10,695,205-10,710,015)mRNA (may differ from genome)Protein (392 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PK1IP_HUMAN
DESCRIPTION: RecName: Full=p21-activated protein kinase-interacting protein 1; AltName: Full=PAK/PLC-interacting protein 1; Short=hPIP1; AltName: Full=PAK1-interacting protein 1; AltName: Full=WD repeat-containing protein 84;
FUNCTION: Negatively regulates the PAK1 kinase. PAK1 is a member of the PAK kinase family, which have been shown to play a positive role in the regulation of signaling pathways involving MAPK8 and RELA. PAK1 exists as an inactive homodimer, which is activated by binding of small GTPases such as CDC42 to an N-terminal regulatory domain. PAK1IP1 also binds to the N-terminus of PAK1, and inhibits the specific activation of PAK1 by CDC42.
SUBUNIT: Interacts with PAK1.
SUBCELLULAR LOCATION: Nucleus, nucleolus.
TISSUE SPECIFICITY: Expressed in brain, colon, heart, kidney, liver, lung, muscle, peripheral blood leukocytes, placenta, small intestine, spleen and thymus.
SIMILARITY: Contains 5 WD repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 29.01 RPKM in Prostate
Total median expression: 444.51 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -55.00330-0.167 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR020472 - G-protein_beta_WD-40_rep
IPR015943 - WD40/YVTN_repeat-like_dom
IPR001680 - WD40_repeat
IPR019775 - WD40_repeat_CS
IPR017986 - WD40_repeat_dom

Pfam Domains:
PF00400 - WD domain, G-beta repeat

SCOP Domains:
50952 - Soluble quinoprotein glucose dehydrogenase
50956 - Thermostable phytase (3-phytase)
50960 - TolB, C-terminal domain
63825 - YWTD domain
63829 - Calcium-dependent phosphotriesterase
69304 - Tricorn protease N-terminal domain
101898 - NHL repeat
50965 - Galactose oxidase, central domain
75011 - 3-carboxy-cis,cis-mucoante lactonizing enzyme
101908 - Putative isomerase YbhE
117289 - Nucleoporin domain
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase
50974 - Nitrous oxide reductase, N-terminal domain
50978 - WD40 repeat-like
50993 - Peptidase/esterase 'gauge' domain
69322 - Tricorn protease domain 2
50998 - Quinoprotein alcohol dehydrogenase-like
51004 - C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
82171 - DPP6 N-terminal domain-like

ModBase Predicted Comparative 3D Structure on Q9NWT1
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details Gene Details Gene Details
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 RGDEnsembl  SGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0008283 cell proliferation
GO:0009968 negative regulation of signal transduction
GO:0042254 ribosome biogenesis
GO:0042273 ribosomal large subunit biogenesis
GO:0060021 palate development
GO:1901796 regulation of signal transduction by p53 class mediator

Cellular Component:
GO:0005634 nucleus
GO:0005730 nucleolus


-  Descriptions from all associated GenBank mRNAs
  BC010907 - Homo sapiens PAK1 interacting protein 1, mRNA (cDNA clone MGC:13426 IMAGE:4251347), complete cds.
AF283303 - Homo sapiens PAK/PLC-interacting protein 1 mRNA, complete cds.
AK000631 - Homo sapiens cDNA FLJ20624 fis, clone KAT04557.
AK225516 - Homo sapiens mRNA for PAK1 interacting protein 1 variant, clone: KAT04557.
KJ904789 - Synthetic construct Homo sapiens clone ccsbBroadEn_14183 PAK1IP1 gene, encodes complete protein.
AB527917 - Synthetic construct DNA, clone: pF1KB0942, Homo sapiens PAK1IP1 gene for PAK1 interacting protein 1, without stop codon, in Flexi system.
KU178675 - Homo sapiens PAK1 interacting protein 1 isoform 1 (PAK1IP1) mRNA, partial cds.
KU178676 - Homo sapiens PAK1 interacting protein 1 isoform 4 (PAK1IP1) mRNA, complete cds, alternatively spliced.
DQ892798 - Synthetic construct clone IMAGE:100005428; FLH189823.01X; RZPDo839B0775D PAK1 interacting protein 1 (PAK1IP1) gene, encodes complete protein.
DQ896045 - Synthetic construct Homo sapiens clone IMAGE:100010505; FLH189819.01L; RZPDo839B0765D PAK1 interacting protein 1 (PAK1IP1) gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000379568.1, ENST00000379568.2, ENST00000379568.3, NM_017906, PIP1, PK1IP_HUMAN, Q5T4J2, Q96QJ8, Q96T87, Q9NWT1, uc318pbd.1, uc318pbd.2, WDR84
UCSC ID: ENST00000379568.4_4
RefSeq Accession: NM_017906.3
Protein: Q9NWT1 (aka PK1IP_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.