Human Gene PAK2 (ENST00000327134.7_4) from GENCODE V47lift37
  Description: p21 (RAC1) activated kinase 2 (from RefSeq NM_002577.4)
Gencode Transcript: ENST00000327134.7_4
Gencode Gene: ENSG00000180370.10_7
Transcript (Including UTRs)
   Position: hg19 chr3:196,466,728-196,559,518 Size: 92,791 Total Exon Count: 15 Strand: +
Coding Region
   Position: hg19 chr3:196,509,518-196,555,276 Size: 45,759 Coding Exon Count: 14 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:196,466,728-196,559,518)mRNA (may differ from genome)Protein (524 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
Human Cortex Gene ExpressionMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PAK2_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase PAK 2; EC=2.7.11.1; AltName: Full=Gamma-PAK; AltName: Full=PAK65; AltName: Full=S6/H4 kinase; AltName: Full=p21-activated kinase 2; Short=PAK-2; AltName: Full=p58; Contains: RecName: Full=PAK-2p27; Short=p27; Contains: RecName: Full=PAK-2p34; Short=p34; AltName: Full=C-t-PAK2;
FUNCTION: Serine/threonine protein kinase that plays a role in a variety of different signaling pathways including cytoskeleton regulation, cell motility, cell cycle progression, apoptosis or proliferation. Acts as downstream effector of the small GTPases CDC42 and RAC1. Activation by the binding of active CDC42 and RAC1 results in a conformational change and a subsequent autophosphorylation on several serine and/or threonine residues. Full-length PAK2 stimulates cell survival and cell growth. Phosphorylates MAPK4 and MAPK6 and activates the downstream target MAPKAPK5, a regulator of F-actin polymerization and cell migration. Phosphorylates JUN and plays an important role in EGF- induced cell proliferation. Phosphorylates many other substrates including histone H4 to promote assembly of H3.3 and H4 into nucleosomes, BAD, ribosomal protein S6, or MBP. Additionally, associates with ARHGEF7 and GIT1 to perform kinase-independent functions such as spindle orientation control during mitosis. On the other hand, apoptotic stimuli such as DNA damage lead to caspase-mediated cleavage of PAK2, generating PAK-2p34, an active p34 fragment that translocates to the nucleus and promotes cellular apoptosis involving the JNK signaling pathway. Caspase- activated PAK2 phosphorylates MKNK1 and reduces cellular translation.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
ENZYME REGULATION: Activated by binding small G proteins. Binding of GTP-bound CDC42 or RAC1 to the autoregulatory region releases monomers from the autoinhibited dimer, enables phosphorylation of Thr-402 and allows the kinase domain to adopt an active structure (By similarity). Following caspase cleavage, autophosphorylted PAK-2p34 is constitutively active.
SUBUNIT: Interacts tightly with GTP-bound but not GDP-bound CDC42/p21 and RAC1. Interacts with SH3MD4. Interacts with and activated by HIV-1 Nef. Interacts with SCRIB. Interacts with ARHGEF7 and GIT1. PAK-2p34 interacts with ARHGAP10.
INTERACTION: Self; NbExp=3; IntAct=EBI-1045887, EBI-1045887; P55210:CASP7; NbExp=6; IntAct=EBI-1045887, EBI-523958; P42858:HTT; NbExp=2; IntAct=EBI-1045887, EBI-466029; P53667:LIMK1; NbExp=2; IntAct=EBI-1045887, EBI-444403; P04049:RAF1; NbExp=2; IntAct=EBI-1045887, EBI-365996;
SUBCELLULAR LOCATION: Serine/threonine-protein kinase PAK 2: Cytoplasm. Note=MYO18A mediates the cellular distribution of the PAK2-ARHGEF7-GIT1 complex to the inner surface of the cell membrane.
SUBCELLULAR LOCATION: PAK-2p34: Nucleus. Cytoplasm, perinuclear region. Membrane; Lipid-anchor. Note=Interaction with ARHGAP10 probably changes PAK-2p34 location to cytoplasmic perinuclear region. Myristoylation changes PAK-2p34 location to the membrane.
TISSUE SPECIFICITY: Ubiquitously expressed. Higher levels seen in skeletal muscle, ovary, thymus and spleen.
PTM: Full length PAK2 is autophosphorylated when activated by CDC42/p21. Following cleavage, both peptides, PAK-2p27 and PAK- 2p34, become highly autophosphorylated, with PAK-2p27 being phosphorylated on serine and PAK-2p34 on threonine residues, respectively. Autophosphorylation of PAK-2p27 can occur in the absence of any effectors and is dependent on phosphorylation of Thr-402, because PAK-2p27 is acting as an exogenous substrate.
PTM: During apoptosis proteolytically cleaved by caspase-3 or caspase-3-like proteases to yield active PAK-2p34.
PTM: Ubiquitinated, leading to its proteasomal degradation.
PTM: PAK-2p34 is myristoylated.
SIMILARITY: Belongs to the protein kinase superfamily. STE Ser/Thr protein kinase family. STE20 subfamily.
SIMILARITY: Contains 1 CRIB domain.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PAK2
Diseases sorted by gene-association score: hiv-1 (4)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 28.76 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 657.99 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -144.20322-0.448 Picture PostScript Text
3' UTR -1045.704242-0.247 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000095 - PAK_box_Rho-bd
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF00786 - P21-Rho-binding domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3PCS - X-ray


ModBase Predicted Comparative 3D Structure on Q13177
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003824 catalytic activity
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0019901 protein kinase binding
GO:0030296 protein tyrosine kinase activator activity
GO:0031267 small GTPase binding
GO:0042802 identical protein binding
GO:0045296 cadherin binding
GO:0048365 Rac GTPase binding

Biological Process:
GO:0002223 stimulatory C-type lectin receptor signaling pathway
GO:0006468 protein phosphorylation
GO:0006469 negative regulation of protein kinase activity
GO:0006915 apoptotic process
GO:0007165 signal transduction
GO:0007266 Rho protein signal transduction
GO:0007346 regulation of mitotic cell cycle
GO:0008152 metabolic process
GO:0016032 viral process
GO:0016310 phosphorylation
GO:0016477 cell migration
GO:0018105 peptidyl-serine phosphorylation
GO:0023014 signal transduction by protein phosphorylation
GO:0030036 actin cytoskeleton organization
GO:0031098 stress-activated protein kinase signaling cascade
GO:0031295 T cell costimulation
GO:0035722 interleukin-12-mediated signaling pathway
GO:0038095 Fc-epsilon receptor signaling pathway
GO:0040008 regulation of growth
GO:0042981 regulation of apoptotic process
GO:0043066 negative regulation of apoptotic process
GO:0043408 regulation of MAPK cascade
GO:0046777 protein autophosphorylation
GO:0048010 vascular endothelial growth factor receptor signaling pathway
GO:0050690 regulation of defense response to virus by virus
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation
GO:0050852 T cell receptor signaling pathway
GO:0060996 dendritic spine development
GO:0061098 positive regulation of protein tyrosine kinase activity
GO:0071407 cellular response to organic cyclic compound
GO:2001238 positive regulation of extrinsic apoptotic signaling pathway
GO:2001271 negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AK291339 - Homo sapiens cDNA FLJ75088 complete cds, highly similar to Homo sapiens p21 (CDKN1A)-activated kinase 2 (PAK2), mRNA.
DL492487 - Novel nucleic acids.
DL490957 - Novel nucleic acids.
BC069613 - Homo sapiens p21 protein (Cdc42/Rac)-activated kinase 2, mRNA (cDNA clone MGC:97077 IMAGE:7262289), complete cds.
U24153 - Homo sapiens p21-activated protein kinase (Pak2) mRNA, complete cds.
CU686938 - Synthetic construct Homo sapiens gateway clone IMAGE:100022650 5' read PAK2 mRNA.
KJ905245 - Synthetic construct Homo sapiens clone ccsbBroadEn_14727 PAK2 gene, encodes complete protein.
JD043218 - Sequence 24242 from Patent EP1572962.
U25975 - Human serine kinase (hPAK65) mRNA, partial cds.
JD304839 - Sequence 285863 from Patent EP1572962.
JD381976 - Sequence 363000 from Patent EP1572962.
JD022998 - Sequence 4022 from Patent EP1572962.
AF092132 - Homo sapiens PAK2 mRNA, complete cds.
JD493886 - Sequence 474910 from Patent EP1572962.
JD556886 - Sequence 537910 from Patent EP1572962.
JD212129 - Sequence 193153 from Patent EP1572962.
JD244168 - Sequence 225192 from Patent EP1572962.
JD243462 - Sequence 224486 from Patent EP1572962.
BC031667 - Homo sapiens p21 protein (Cdc42/Rac)-activated kinase 2, mRNA (cDNA clone IMAGE:3448687), with apparent retained intron.
JD412940 - Sequence 393964 from Patent EP1572962.
BC063539 - Homo sapiens cDNA clone IMAGE:4521750, partial cds.
JD083630 - Sequence 64654 from Patent EP1572962.
BC046197 - Homo sapiens p21 (CDKN1A)-activated kinase 2, mRNA (cDNA clone IMAGE:6058556), partial cds.
JD025957 - Sequence 6981 from Patent EP1572962.
JD034468 - Sequence 15492 from Patent EP1572962.
DQ600075 - Homo sapiens piRNA piR-38141, complete sequence.
JD199227 - Sequence 180251 from Patent EP1572962.
JD120546 - Sequence 101570 from Patent EP1572962.
JD379642 - Sequence 360666 from Patent EP1572962.
JD311756 - Sequence 292780 from Patent EP1572962.
DQ786200 - Homo sapiens clone HLS_IMAGE_136324 mRNA sequence.
JD053069 - Sequence 34093 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q13177 (Reactome details) participates in the following event(s):

R-HSA-164943 Nef mediated activation of the T-cell receptor
R-HSA-211651 Cleavage of PAK-2 at 212
R-HSA-211583 Partial autophosphorylation of PAK-2 at Ser-19, Ser-20, Ser-55, Ser-192, and Ser-197
R-HSA-8981931 RAC1 and CDC42 activate PAK2
R-HSA-211650 Autophosphorylation of PAK-2p34 in the activation loop
R-HSA-211712 Proteolytic PAK-2p34 fragment translocates to the nucleus
R-HSA-211716 Rho GTPase-activating protein 10 (RHG10) interacts with caspase-activated PAK-2p34
R-HSA-5218847 PAK2 binds NCK
R-HSA-430183 NCK binds PAK
R-HSA-389788 Activation of PAKs by RAC1 and CDC42
R-HSA-399930 Activation of PAK by Rac1
R-HSA-428531 Recruitment of PAK to NCK
R-HSA-3928641 PAK binds RAC and bPIX
R-HSA-211731 Interaction of PAK-2p34 with RGH10/ PS-GAP results in accumulation of PAK-2p34 in the perinuclear region
R-HSA-5357472 PAK1-3 autophosphorylates
R-HSA-5627775 Autophosphorylation of PAK1,2,3
R-HSA-2730856 Autophosphorylation of PAK
R-HSA-5668932 PAK2 phosphorylates myosin regulatory light chain (MRLC)
R-HSA-5218832 CDC42:GTP binds PAK2
R-HSA-5357483 RAC1 binds PAK1-3
R-HSA-2730889 Recruitment of PAK to the membrane by binding active RAC1
R-HSA-399939 Autophosphorylation of PAK
R-HSA-5357445 PAK1-3 dimer disassociates
R-HSA-5624492 PAK phosphorylates p21 RAF1 on S338
R-HSA-3928625 PAKs autophosphorylate
R-HSA-442832 PAK phosphorylates cortactin
R-HSA-5687086 PAK1,2,3 phosphorylates MAPK6,4
R-HSA-5357477 PAK1-3 phosphorylates VE-cadherin
R-HSA-5668984 PAK1 or PAK2 phosphorylates MYLK
R-HSA-5218814 PAK2 autophorylates
R-HSA-5218812 FYN phosphorylates PAK2
R-HSA-399952 Phosphorylation of LIMK-1 by PAK
R-HSA-3928640 PAKs phosphorylate MLC
R-HSA-164944 Nef and signal transduction
R-HSA-211736 Stimulation of the cell death response by PAK-2p34
R-HSA-8950505 Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation
R-HSA-5627123 RHO GTPases activate PAKs
R-HSA-211728 Regulation of PAK-2p34 activity by PS-GAP/RHG10
R-HSA-211733 Regulation of activated PAK-2p34 by proteasome mediated degradation
R-HSA-164952 The role of Nef in HIV-1 replication and disease pathogenesis
R-HSA-75153 Apoptotic execution phase
R-HSA-4420097 VEGFA-VEGFR2 Pathway
R-HSA-202433 Generation of second messenger molecules
R-HSA-389359 CD28 dependent Vav1 pathway
R-HSA-5687128 MAPK6/MAPK4 signaling
R-HSA-399954 Sema3A PAK dependent Axon repulsion
R-HSA-428540 Activation of RAC1
R-HSA-3928664 Ephrin signaling
R-HSA-9020591 Interleukin-12 signaling
R-HSA-195258 RHO GTPase Effectors
R-HSA-169911 Regulation of Apoptosis
R-HSA-5218920 VEGFR2 mediated vascular permeability
R-HSA-2871796 FCERI mediated MAPK activation
R-HSA-162909 Host Interactions of HIV factors
R-HSA-109581 Apoptosis
R-HSA-194138 Signaling by VEGF
R-HSA-202403 TCR signaling
R-HSA-389356 CD28 co-stimulation
R-HSA-5683057 MAPK family signaling cascades
R-HSA-373755 Semaphorin interactions
R-HSA-5621575 CD209 (DC-SIGN) signaling
R-HSA-376176 Signaling by ROBO receptors
R-HSA-2682334 EPH-Ephrin signaling
R-HSA-447115 Interleukin-12 family signaling
R-HSA-194315 Signaling by Rho GTPases
R-HSA-2454202 Fc epsilon receptor (FCERI) signaling
R-HSA-162906 HIV Infection
R-HSA-5357801 Programmed Cell Death
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-1280218 Adaptive Immune System
R-HSA-388841 Costimulation by the CD28 family
R-HSA-162582 Signal Transduction
R-HSA-422475 Axon guidance
R-HSA-5621481 C-type lectin receptors (CLRs)
R-HSA-449147 Signaling by Interleukins
R-HSA-168249 Innate Immune System
R-HSA-5663205 Infectious disease
R-HSA-168256 Immune System
R-HSA-1266738 Developmental Biology
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-1643685 Disease

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000327134.1, ENST00000327134.2, ENST00000327134.3, ENST00000327134.4, ENST00000327134.5, ENST00000327134.6, NM_002577, PAK2_HUMAN, Q13154, Q13177, Q6ISC3, uc317sfe.1, uc317sfe.2
UCSC ID: ENST00000327134.7_4
RefSeq Accession: NM_002577.4
Protein: Q13177 (aka PAK2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.