Human Gene PAK4 (ENST00000360442.8_7) from GENCODE V47lift37
  Description: p21 (RAC1) activated kinase 4, transcript variant 1 (from RefSeq NM_005884.5)
Gencode Transcript: ENST00000360442.8_7
Gencode Gene: ENSG00000130669.17_16
Transcript (Including UTRs)
   Position: hg19 chr19:39,616,426-39,670,044 Size: 53,619 Total Exon Count: 10 Strand: +
Coding Region
   Position: hg19 chr19:39,660,194-39,669,219 Size: 9,026 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:39,616,426-39,670,044)mRNA (may differ from genome)Protein (591 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PAK4_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase PAK 4; EC=2.7.11.1; AltName: Full=p21-activated kinase 4; Short=PAK-4;
FUNCTION: Serine/threonine protein kinase that plays a role in a variety of different signaling pathways including cytoskeleton regulation, cell migration, growth, proliferation or cell survival. Activation by various effectors including growth factor receptors or active CDC42 and RAC1 results in a conformational change and a subsequent autophosphorylation on several serine and/or threonine residues. Phosphorylates and inactivates the protein phosphatase SSH1, leading to increased inhibitory phosphorylation of the actin binding/depolymerizing factor cofilin. Decreased cofilin activity may lead to stabilization of actin filaments. Phosphorylates LIMK1, a kinase that also inhibits the activity of cofilin. Phosphorylates integrin beta5/ITGB5 and thus regulates cell motility. Phosphorylates ARHGEF2 and activates the downstream target RHOA that plays a role in the regulation of assembly of focal adhesions and actin stress fibers. Stimulates cell survival by phosphorylating the BCL2 antagonist of cell death BAD. Alternatively, inhibits apoptosis by preventing caspase-8 binding to death domain receptors in a kinase independent manner. Plays a role in cell-cycle progression by controlling levels of the cell-cycle regulatory protein CDKN1A and by phosphorylating RAN.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
SUBUNIT: Interacts with FGFR2 and GRB2 (By similarity). Interacts tightly with GTP-bound but not GDP-bound CDC42/p21 and weakly with RAC1.
SUBCELLULAR LOCATION: Cytoplasm. Note=Seems to shuttle between cytoplasmic compartments depending on the activating effector. For example, can be found on the cell periphery after activation of growth-factor or integrin-mediated signaling pathways.
TISSUE SPECIFICITY: Highest expression in prostate, testis and colon.
PTM: Autophosphorylated on serine residues when activated by CDC42/p21.
PTM: Phosphorylated on tyrosine residues upon stimulation of FGFR2 (By similarity).
SIMILARITY: Belongs to the protein kinase superfamily. STE Ser/Thr protein kinase family. STE20 subfamily.
SIMILARITY: Contains 1 CRIB domain.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=BAA86456.1; Type=Erroneous initiation; Sequence=BAC11166.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PAK4
Diseases sorted by gene-association score: breast adenoma (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D013749 Tetrachlorodibenzodioxin
  • C569670 1-(4-((2-(2-aminopyrimidin-5-yl)-7-methyl-4-morpholinothieno(3,2-d)pyrimidin-6-yl)methyl)piperazin-1-yl)-2-hydroxypropan-1-one
  • C016403 2,4-dinitrotoluene
  • C009505 4,4'-diaminodiphenylmethane
  • D000082 Acetaminophen
  • D001564 Benzo(a)pyrene
  • D002794 Choline
  • D004997 Ethinyl Estradiol
  • D005038 Ethylnitrosourea
  • D005485 Flutamide
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 14.58 RPKM in Testis
Total median expression: 295.16 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -95.80229-0.418 Picture PostScript Text
3' UTR -323.30825-0.392 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000095 - PAK_box_Rho-bd
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom

Pfam Domains:
PF00069 - Protein kinase domain
PF00786 - P21-Rho-binding domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2BVA - X-ray MuPIT 2CDZ - X-ray MuPIT 2J0I - X-ray MuPIT 2OV2 - X-ray MuPIT 2Q0N - X-ray MuPIT 2X4Z - X-ray MuPIT 4APP - X-ray MuPIT 4FIE - X-ray MuPIT 4FIF - X-ray MuPIT 4FIG - X-ray MuPIT 4FIH - X-ray MuPIT 4FII - X-ray MuPIT 4FIJ - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O96013
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0048365 Rac GTPase binding
GO:0098641 cadherin binding involved in cell-cell adhesion

Biological Process:
GO:0006468 protein phosphorylation
GO:0006915 apoptotic process
GO:0007010 cytoskeleton organization
GO:0007049 cell cycle
GO:0007165 signal transduction
GO:0007266 Rho protein signal transduction
GO:0007346 regulation of mitotic cell cycle
GO:0008283 cell proliferation
GO:0016049 cell growth
GO:0016310 phosphorylation
GO:0016477 cell migration
GO:0023014 signal transduction by protein phosphorylation
GO:0030036 actin cytoskeleton organization
GO:0031098 stress-activated protein kinase signaling cascade
GO:0032147 activation of protein kinase activity
GO:0042981 regulation of apoptotic process
GO:0043408 regulation of MAPK cascade
GO:0045766 positive regulation of angiogenesis
GO:0060996 dendritic spine development
GO:0071407 cellular response to organic cyclic compound
GO:0098609 cell-cell adhesion
GO:2000352 negative regulation of endothelial cell apoptotic process

Cellular Component:
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005913 cell-cell adherens junction
GO:0005925 focal adhesion


-  Descriptions from all associated GenBank mRNAs
  AK294586 - Homo sapiens cDNA FLJ58808 complete cds, highly similar to Homo sapiens p21(CDKN1A)-activated kinase 4 (PAK4), transcript variant 4, mRNA.
AK293517 - Homo sapiens cDNA FLJ55049 complete cds, highly similar to Serine/threonine-protein kinase PAK 4 (EC 2.7.11.1).
AK291839 - Homo sapiens cDNA FLJ76899 complete cds, highly similar to Homo sapiens p21(CDKN1A)-activated kinase 4 (PAK4), mRNA.
AX775863 - Sequence 133 from Patent WO03048202.
AX775865 - Sequence 135 from Patent WO03048202.
AK300632 - Homo sapiens cDNA FLJ61413 complete cds, highly similar to Serine/threonine-protein kinase PAK 4 (EC 2.7.11.1).
BC002921 - Homo sapiens p21 protein (Cdc42/Rac)-activated kinase 4, mRNA (cDNA clone MGC:10333 IMAGE:3956856), complete cds.
AX775871 - Sequence 141 from Patent WO03048202.
BC034511 - Homo sapiens p21 protein (Cdc42/Rac)-activated kinase 4, mRNA (cDNA clone MGC:9413 IMAGE:3882622), complete cds.
AK304651 - Homo sapiens cDNA FLJ54255 complete cds, highly similar to Serine/threonine-protein kinase PAK 4 (EC 2.7.11.1).
BC011368 - Homo sapiens p21 protein (Cdc42/Rac)-activated kinase 4, mRNA (cDNA clone MGC:9873 IMAGE:3867403), complete cds.
AL834236 - Homo sapiens mRNA; cDNA DKFZp547G182 (from clone DKFZp547G182).
AX775867 - Sequence 137 from Patent WO03048202.
AX775869 - Sequence 139 from Patent WO03048202.
BC025282 - Homo sapiens p21 protein (Cdc42/Rac)-activated kinase 4, mRNA (cDNA clone MGC:39196 IMAGE:5421365), complete cds.
AF005046 - Homo sapiens serine/threonine kinase mRNA, complete cds.
AB032968 - Homo sapiens KIAA1142 mRNA for KIAA1142 protein.
JD409593 - Sequence 390617 from Patent EP1572962.
JD478338 - Sequence 459362 from Patent EP1572962.
DQ574712 - Homo sapiens piRNA piR-42824, complete sequence.
AM393512 - Synthetic construct Homo sapiens clone IMAGE:100002770 for hypothetical protein (PAK4 gene).
AM392622 - Synthetic construct Homo sapiens clone IMAGE:100003021 for hypothetical protein (PAK4 gene).
AM392751 - Synthetic construct Homo sapiens clone IMAGE:100003020 for hypothetical protein (PAK4 gene).
GQ129406 - Synthetic construct Homo sapiens clone HAIB:100068708; DKFZo004F1036 p21(CDKN1A)-activated kinase 4 protein (PAK4) gene, partial cds.
GQ129407 - Synthetic construct Homo sapiens clone HAIB:100068611; DKFZo008F1035 p21(CDKN1A)-activated kinase 4 protein (PAK4) gene, complete cds.
DQ891039 - Synthetic construct clone IMAGE:100003669; FLH168745.01X; RZPDo839C0994D p21(CDKN1A)-activated kinase 4 (PAK4) gene, encodes complete protein.
DQ894218 - Synthetic construct Homo sapiens clone IMAGE:100008678; FLH168741.01L; RZPDo839C0993D p21(CDKN1A)-activated kinase 4 (PAK4) gene, encodes complete protein.
AB384123 - Synthetic construct DNA, clone: pF1KSDA1142, Homo sapiens PAK4 gene for serine/threonine-protein kinase PAK 4, complete cds, without stop codon, in Flexi system.
CU679910 - Synthetic construct Homo sapiens gateway clone IMAGE:100017420 5' read PAK4 mRNA.
CU678290 - Synthetic construct Homo sapiens gateway clone IMAGE:100019343 5' read PAK4 mRNA.
KJ892998 - Synthetic construct Homo sapiens clone ccsbBroadEn_02392 PAK4 gene, encodes complete protein.
KJ902086 - Synthetic construct Homo sapiens clone ccsbBroadEn_11480 PAK4 gene, encodes complete protein.
KJ905390 - Synthetic construct Homo sapiens clone ccsbBroadEn_14960 PAK4 gene, encodes complete protein.
AJ011855 - Homo sapiens mRNA for PAK4 protein.
AK074728 - Homo sapiens cDNA FLJ90247 fis, clone NT2RM2001902, highly similar to Homo sapiens mRNA for PAK4 protein.
JD190634 - Sequence 171658 from Patent EP1572962.
JD455673 - Sequence 436697 from Patent EP1572962.
JD476884 - Sequence 457908 from Patent EP1572962.
JD126424 - Sequence 107448 from Patent EP1572962.
JD130432 - Sequence 111456 from Patent EP1572962.
JD415585 - Sequence 396609 from Patent EP1572962.
JD192375 - Sequence 173399 from Patent EP1572962.
JD330556 - Sequence 311580 from Patent EP1572962.
JD387444 - Sequence 368468 from Patent EP1572962.
JD127298 - Sequence 108322 from Patent EP1572962.
JD157687 - Sequence 138711 from Patent EP1572962.
JD470050 - Sequence 451074 from Patent EP1572962.
JD220497 - Sequence 201521 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_agrPathway - Agrin in Postsynaptic Differentiation

Reactome (by CSHL, EBI, and GO)

Protein O96013 (Reactome details) participates in the following event(s):

R-HSA-428531 Recruitment of PAK to NCK
R-HSA-428540 Activation of RAC1
R-HSA-376176 Signaling by ROBO receptors
R-HSA-422475 Axon guidance
R-HSA-1266738 Developmental Biology

-  Other Names for This Gene
  Alternate Gene Symbols: B4DGG6, ENST00000360442.1, ENST00000360442.2, ENST00000360442.3, ENST00000360442.4, ENST00000360442.5, ENST00000360442.6, ENST00000360442.7, KIAA1142, NM_005884, O96013, PAK4_HUMAN, Q8N4E1, Q8NCH5, Q8NDE3, Q9BU33, Q9ULS8, uc318boa.1, uc318boa.2
UCSC ID: ENST00000360442.8_7
RefSeq Accession: NM_005884.5
Protein: O96013 (aka PAK4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.