Human Gene PCYOX1 (ENST00000433351.7_4) from GENCODE V47lift37
  Description: prenylcysteine oxidase 1 (from RefSeq NM_016297.4)
Gencode Transcript: ENST00000433351.7_4
Gencode Gene: ENSG00000116005.12_10
Transcript (Including UTRs)
   Position: hg19 chr2:70,485,269-70,508,317 Size: 23,049 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr2:70,485,297-70,504,524 Size: 19,228 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:70,485,269-70,508,317)mRNA (may differ from genome)Protein (505 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PCYOX_HUMAN
DESCRIPTION: RecName: Full=Prenylcysteine oxidase 1; EC=1.8.3.5; AltName: Full=Prenylcysteine lyase; Flags: Precursor;
FUNCTION: Involved in the degradation of prenylated proteins. Cleaves the thioether bond of prenyl-L-cysteines, such as farnesylcysteine and geranylgeranylcysteine.
CATALYTIC ACTIVITY: An S-prenyl-L-cysteine + O(2) + H(2)O = a prenal + L-cysteine + H(2)O(2).
COFACTOR: FAD.
SUBCELLULAR LOCATION: Lysosome.
TISSUE SPECIFICITY: Ubiquitous.
PTM: The protein is glycosylated at one or more potential N- glycosylation sites.
SIMILARITY: Belongs to the prenylcysteine oxidase family.
CAUTION: Was originally (PubMed:10585463) thought to be a lyase and was therefore termed prenylcysteine lyase.
SEQUENCE CAUTION: Sequence=BAA74931.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 27.44 RPKM in Cervix - Endocervix
Total median expression: 775.67 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -9.3028-0.332 Picture PostScript Text
3' UTR -1056.703793-0.279 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR010795 - Prenylcys_lyase
IPR017046 - Prenylcysteine_Oxase

Pfam Domains:
PF01593 - Flavin containing amine oxidoreductase
PF07156 - Prenylcysteine lyase
PF13450 - NAD(P)-binding Rossmann-like domain

SCOP Domains:
51735 - NAD(P)-binding Rossmann-fold domains
51905 - FAD/NAD(P)-binding domain
51971 - Nucleotide-binding domain
51984 - MurCD N-terminal domain

ModBase Predicted Comparative 3D Structure on Q9UHG3
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001735 prenylcysteine oxidase activity
GO:0008555 chloride-transporting ATPase activity
GO:0016491 oxidoreductase activity
GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor

Biological Process:
GO:0006821 chloride transport
GO:0030327 prenylated protein catabolic process
GO:0030328 prenylcysteine catabolic process
GO:0030329 prenylcysteine metabolic process
GO:0055114 oxidation-reduction process
GO:0099133 ATP hydrolysis coupled anion transmembrane transport
GO:1902476 chloride transmembrane transport

Cellular Component:
GO:0005764 lysosome
GO:0005774 vacuolar membrane
GO:0005886 plasma membrane
GO:0034361 very-low-density lipoprotein particle
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  JD425740 - Sequence 406764 from Patent EP1572962.
AK316013 - Homo sapiens cDNA, FLJ78912 complete cds, highly similar to Prenylcysteine oxidase precursor (EC 1.8.3.5).
AF181490 - Homo sapiens prenylcysteine lyase (PCL1) mRNA, complete cds.
JD204104 - Sequence 185128 from Patent EP1572962.
BC051891 - Homo sapiens prenylcysteine oxidase 1, mRNA (cDNA clone MGC:60307 IMAGE:5773815), complete cds.
JD198733 - Sequence 179757 from Patent EP1572962.
JD117725 - Sequence 98749 from Patent EP1572962.
JD371786 - Sequence 352810 from Patent EP1572962.
AY359063 - Homo sapiens clone DNA62880 PCL1 (UNQ597) mRNA, complete cds.
BC033815 - Homo sapiens prenylcysteine oxidase 1, mRNA (cDNA clone MGC:45086 IMAGE:5207140), complete cds.
AK314453 - Homo sapiens cDNA, FLJ95254, highly similar to Homo sapiens prenylcysteine lyase (PCL1), mRNA.
AK303043 - Homo sapiens cDNA FLJ51671 complete cds, highly similar to Prenylcysteine oxidase precursor (EC 1.8.3.5).
BC022259 - Homo sapiens prenylcysteine oxidase 1, mRNA (cDNA clone IMAGE:4663864).
AK225302 - Homo sapiens mRNA for prenylcysteine oxidase 1 variant, clone: HEP03456.
AB020715 - Homo sapiens KIAA0908 mRNA for KIAA0908 protein.
AB384041 - Synthetic construct DNA, clone: pF1KSDA0908, Homo sapiens PCYOX1 gene for prenylcysteine oxidase precursor, complete cds, without stop codon, in Flexi system.
DQ890801 - Synthetic construct clone IMAGE:100003431; FLH166044.01X; RZPDo839C0386D prenylcysteine oxidase 1 (PCYOX1) gene, encodes complete protein.
DQ893956 - Synthetic construct Homo sapiens clone IMAGE:100008416; FLH166040.01L; RZPDo839C0385D prenylcysteine oxidase 1 (PCYOX1) gene, encodes complete protein.
CU689758 - Synthetic construct Homo sapiens gateway clone IMAGE:100019712 5' read PCYOX1 mRNA.
KJ898900 - Synthetic construct Homo sapiens clone ccsbBroadEn_08294 PCYOX1 gene, encodes complete protein.
AK296478 - Homo sapiens cDNA FLJ51879 complete cds, highly similar to Prenylcysteine oxidase precursor (EC 1.8.3.5).
BC007029 - Homo sapiens prenylcysteine oxidase 1, mRNA (cDNA clone IMAGE:3933577), partial cds.
DQ593504 - Homo sapiens piRNA piR-33616, complete sequence.
JD050419 - Sequence 31443 from Patent EP1572962.
JD118482 - Sequence 99506 from Patent EP1572962.
JD283325 - Sequence 264349 from Patent EP1572962.
JD497498 - Sequence 478522 from Patent EP1572962.
JD208755 - Sequence 189779 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B2RB14, B7Z9P8, ENST00000433351.1, ENST00000433351.2, ENST00000433351.3, ENST00000433351.4, ENST00000433351.5, ENST00000433351.6, KIAA0908 , NM_016297, O94982, PCL1, PCYOX1 , PCYOX_HUMAN, Q8N4N5, Q96QM8, Q9UHG3, uc320bxt.1, uc320bxt.2, UNQ597/PRO1183
UCSC ID: ENST00000433351.7_4
RefSeq Accession: NM_016297.4
Protein: Q9UHG3 (aka PCYOX_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.