Human Gene PEBP1 (ENST00000261313.3_4) from GENCODE V47lift37
  Description: phosphatidylethanolamine binding protein 1 (from RefSeq NM_002567.4)
Gencode Transcript: ENST00000261313.3_4
Gencode Gene: ENSG00000089220.5_7
Transcript (Including UTRs)
   Position: hg19 chr12:118,573,929-118,583,389 Size: 9,461 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr12:118,574,015-118,582,608 Size: 8,594 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:118,573,929-118,583,389)mRNA (may differ from genome)Protein (187 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PEBP1_HUMAN
DESCRIPTION: RecName: Full=Phosphatidylethanolamine-binding protein 1; Short=PEBP-1; AltName: Full=HCNPpp; AltName: Full=Neuropolypeptide h3; AltName: Full=Prostatic-binding protein; AltName: Full=Raf kinase inhibitor protein; Short=RKIP; Contains: RecName: Full=Hippocampal cholinergic neurostimulating peptide; Short=HCNP;
FUNCTION: Binds ATP, opioids and phosphatidylethanolamine. Has lower affinity for phosphatidylinositol and phosphatidylcholine. Serine protease inhibitor which inhibits thrombin, neuropsin and chymotrypsin but not trypsin, tissue type plasminogen activator and elastase (By similarity). Inhibits the kinase activity of RAF1 by inhibiting its activation and by dissociating the RAF1/MEK complex and acting as a competitive inhibitor of MEK phosphorylation.
FUNCTION: HCNP may be involved in the function of the presynaptic cholinergic neurons of the central nervous system. HCNP increases the production of choline acetyltransferase but not acetylcholinesterase. Seems to be mediated by a specific receptor (By similarity).
SUBUNIT: Has a tendency to form dimers by disulfide cross-linking (By similarity). Interacts with RAF1 and this interaction is enhanced if RAF1 is phosphorylated on residues 'Ser-338', 'Ser- 339', 'Tyr-340' and 'Tyr-341'.
SUBCELLULAR LOCATION: Cytoplasm (By similarity).
SIMILARITY: Belongs to the phosphatidylethanolamine-binding protein family.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/PEBP1ID44021ch12q24.html";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PEBP1
Diseases sorted by gene-association score: gastric cardia adenocarcinoma (9)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1366.75 RPKM in Adrenal Gland
Total median expression: 15891.89 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -28.4086-0.330 Picture PostScript Text
3' UTR -225.10781-0.288 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001858 - Phosphotidylethanolamine-bd_CS
IPR008914 - PtdEtn-bd_prot_PEBP

Pfam Domains:
PF01161 - Phosphatidylethanolamine-binding protein

SCOP Domains:
49777 - PEBP-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1BD9 - X-ray MuPIT 1BEH - X-ray MuPIT 2L7W - NMR MuPIT 2QYQ - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P30086
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003723 RNA binding
GO:0004867 serine-type endopeptidase inhibitor activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008289 lipid binding
GO:0008429 phosphatidylethanolamine binding
GO:0019899 enzyme binding
GO:0019901 protein kinase binding
GO:0030414 peptidase inhibitor activity

Biological Process:
GO:0000165 MAPK cascade
GO:0010466 negative regulation of peptidase activity
GO:0010951 negative regulation of endopeptidase activity

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC017396 - Homo sapiens phosphatidylethanolamine binding protein 1, mRNA (cDNA clone MGC:24433 IMAGE:4074533), complete cds.
E05647 - cDNA encoding human hippocampal cholinergic neurostimulating peptide.
X75252 - H.sapiens phosphatidylethanolamine binding protein mRNA.
AK226006 - Homo sapiens mRNA for prostatic binding protein variant, clone: FCC108F03.
BC008714 - Homo sapiens phosphatidylethanolamine binding protein 1, mRNA (cDNA clone MGC:8531 IMAGE:2822606), complete cds.
AK311927 - Homo sapiens cDNA, FLJ92194, Homo sapiens prostatic binding protein (PBP), mRNA.
D16111 - Homo sapiens mRNA for rat phosphatidylethanolamine binding protein homologue, complete cds.
BC018799 - Homo sapiens phosphatidylethanolamine binding protein 1, mRNA (cDNA clone IMAGE:3509990).
EU794643 - Homo sapiens epididymis secretory protein Li 34 (HEL-S-34) mRNA, complete cds.
AK308056 - Homo sapiens cDNA, FLJ98004.
BC031102 - Homo sapiens phosphatidylethanolamine binding protein 1, mRNA (cDNA clone MGC:33956 IMAGE:5300366), complete cds.
AK299414 - Homo sapiens cDNA FLJ51535 complete cds, highly similar to Phosphatidylethanolamine-binding protein 1.
HM131449 - Homo sapiens phosphatidylethanolamine-binding protein 1 mRNA, complete cds.
E09006 - Human cDNA encoding a phosphatidylethanolamine binding protein.
AB528565 - Synthetic construct DNA, clone: pF1KE1006, Homo sapiens PEBP1 gene for phosphatidylethanolamine binding protein 1, without stop codon, in Flexi system.
LF206941 - JP 2014500723-A/14444: Polycomb-Associated Non-Coding RNAs.
X85033 - H.sapiens mRNA for phosphatidylethanolamine binding protein.
E09005 - Human cDNA encoding a phosphatidylethanolamine binding protein.
LF366154 - JP 2014500723-A/173657: Polycomb-Associated Non-Coding RNAs.
EU668351 - Homo sapiens epididymis luminal protein 210 (HEL-210) mRNA, complete cds.
GQ472218 - Homo sapiens epididymis secretory protein Li 96 (HEL-S-96) mRNA, partial cds.
S76773 - neuropolypeptide h3 [human, brain, mRNA Partial, 723 nt].
LF359501 - JP 2014500723-A/167004: Polycomb-Associated Non-Coding RNAs.
DL491947 - Novel nucleic acids.
DL490505 - Novel nucleic acids.
JD335043 - Sequence 316067 from Patent EP1572962.
JD188080 - Sequence 169104 from Patent EP1572962.
JD486663 - Sequence 467687 from Patent EP1572962.
JD486054 - Sequence 467078 from Patent EP1572962.
LF359494 - JP 2014500723-A/166997: Polycomb-Associated Non-Coding RNAs.
JD134366 - Sequence 115390 from Patent EP1572962.
LF359493 - JP 2014500723-A/166996: Polycomb-Associated Non-Coding RNAs.
JD275567 - Sequence 256591 from Patent EP1572962.
JD528712 - Sequence 509736 from Patent EP1572962.
JD485949 - Sequence 466973 from Patent EP1572962.
MA601731 - JP 2018138019-A/173657: Polycomb-Associated Non-Coding RNAs.
MA442518 - JP 2018138019-A/14444: Polycomb-Associated Non-Coding RNAs.
MA595078 - JP 2018138019-A/167004: Polycomb-Associated Non-Coding RNAs.
MA595071 - JP 2018138019-A/166997: Polycomb-Associated Non-Coding RNAs.
MA595070 - JP 2018138019-A/166996: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P30086 (Reactome details) participates in the following event(s):

R-HSA-5675417 PEBP1 binds activated RAF1
R-HSA-5675221 Negative regulation of MAPK pathway
R-HSA-5673001 RAF/MAP kinase cascade
R-HSA-5684996 MAPK1/MAPK3 signaling
R-HSA-5683057 MAPK family signaling cascades
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: B2R4S1, ENST00000261313.1, ENST00000261313.2, NM_002567, P30086, PBP, PEBP, PEBP1_HUMAN, uc317gor.1, uc317gor.2
UCSC ID: ENST00000261313.3_4
RefSeq Accession: NM_002567.4
Protein: P30086 (aka PEBP1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.