Human Gene PELO (ENST00000274311.3_4) from GENCODE V47lift37
  Description: pelota mRNA surveillance and ribosome rescue factor (from RefSeq NM_015946.5)
Gencode Transcript: ENST00000274311.3_4
Gencode Gene: ENSG00000152684.11_8
Transcript (Including UTRs)
   Position: hg19 chr5:52,083,750-52,099,878 Size: 16,129 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr5:52,096,229-52,097,674 Size: 1,446 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:52,083,750-52,099,878)mRNA (may differ from genome)Protein (385 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PELO_HUMAN
DESCRIPTION: RecName: Full=Protein pelota homolog; EC=3.1.-.-;
FUNCTION: Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity (Potential).
COFACTOR: Divalent metal cations (Potential).
SUBCELLULAR LOCATION: Nucleus (Potential). Cytoplasm (By similarity).
TISSUE SPECIFICITY: Ubiquitously expressed.
DOMAIN: The N-terminal domain has the RNA-binding Sm fold. It may harbor the endoribonuclease activity (Potential).
SIMILARITY: Belongs to the eukaryotic release factor 1 family. Pelota subfamily.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 17.45 RPKM in Adrenal Gland
Total median expression: 356.51 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -420.401009-0.417 Picture PostScript Text
3' UTR -505.602204-0.229 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005140 - eRF1_1_Pelota
IPR005141 - eRF1_2
IPR005142 - eRF1_3
IPR004405 - Transl_rel_pelota-like

Pfam Domains:
PF03463 - eRF1 domain 1
PF03464 - eRF1 domain 2
PF03465 - eRF1 domain 3

SCOP Domains:
159065 - Dom34/Pelota N-terminal domain-like
53137 - Translational machinery components
55315 - L30e-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1X52 - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q9BRX2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004518 nuclease activity
GO:0004519 endonuclease activity
GO:0005515 protein binding
GO:0016787 hydrolase activity
GO:0043022 ribosome binding
GO:0046872 metal ion binding

Biological Process:
GO:0006412 translation
GO:0007049 cell cycle
GO:0007492 endoderm development
GO:0008283 cell proliferation
GO:0019827 stem cell population maintenance
GO:0030513 positive regulation of BMP signaling pathway
GO:0032790 ribosome disassembly
GO:0051276 chromosome organization
GO:0051301 cell division
GO:0060231 mesenchymal to epithelial transition
GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay
GO:0070651 nonfunctional rRNA decay
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay
GO:0071025 RNA surveillance
GO:0090305 nucleic acid phosphodiester bond hydrolysis

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  LP895512 - Sequence 376 from Patent EP3253886.
AK300423 - Homo sapiens cDNA FLJ61587 partial cds, highly similar to Integrin alpha-1.
BC050277 - Homo sapiens cDNA clone IMAGE:5271603, containing frame-shift errors.
BC137121 - Homo sapiens integrin, alpha 1, mRNA (cDNA clone MGC:168741 IMAGE:9021118), complete cds.
BC137122 - Homo sapiens integrin, alpha 1, mRNA (cDNA clone MGC:168742 IMAGE:9021119), complete cds.
AK056144 - Homo sapiens cDNA FLJ31582 fis, clone NT2RI2002117, highly similar to Protein pelota homolog.
AY117399 - Homo sapiens pelota major mRNA, complete cds; alternatively spliced.
JD512230 - Sequence 493254 from Patent EP1572962.
JD559619 - Sequence 540643 from Patent EP1572962.
JD152041 - Sequence 133065 from Patent EP1572962.
JD168169 - Sequence 149193 from Patent EP1572962.
JD368059 - Sequence 349083 from Patent EP1572962.
JD346996 - Sequence 328020 from Patent EP1572962.
JD289373 - Sequence 270397 from Patent EP1572962.
JD461739 - Sequence 442763 from Patent EP1572962.
JD378323 - Sequence 359347 from Patent EP1572962.
AK025729 - Homo sapiens cDNA: FLJ22076 fis, clone HEP12479, highly similar to AF132951 Homo sapiens CGI-17 protein mRNA.
BC007650 - Homo sapiens pelota homolog (Drosophila), mRNA (cDNA clone MGC:16032 IMAGE:3608639), complete cds.
BC005889 - Homo sapiens pelota homolog (Drosophila), mRNA (cDNA clone MGC:724 IMAGE:2967612), complete cds.
BC007249 - Homo sapiens pelota homolog (Drosophila), mRNA (cDNA clone MGC:15470 IMAGE:2967002), complete cds.
AF132951 - Homo sapiens CGI-17 protein mRNA, complete cds.
JD523640 - Sequence 504664 from Patent EP1572962.
AK312633 - Homo sapiens cDNA, FLJ93017.
AF139828 - Homo sapiens PELOTA mRNA, complete cds.
JD127816 - Sequence 108840 from Patent EP1572962.
BC022789 - Homo sapiens pelota homolog (Drosophila), mRNA (cDNA clone MGC:15586 IMAGE:3160699), complete cds.
JD405380 - Sequence 386404 from Patent EP1572962.
JD128770 - Sequence 109794 from Patent EP1572962.
JD132684 - Sequence 113708 from Patent EP1572962.
JD492782 - Sequence 473806 from Patent EP1572962.
DQ896198 - Synthetic construct Homo sapiens clone IMAGE:100010658; FLH191100.01L; RZPDo839H0666D pelota homolog (Drosophila) (PELO) gene, encodes complete protein.
DQ892950 - Synthetic construct clone IMAGE:100005580; FLH191104.01X; RZPDo839H0676D pelota homolog (Drosophila) (PELO) gene, encodes complete protein.
CU675737 - Synthetic construct Homo sapiens gateway clone IMAGE:100019189 5' read PELO mRNA.
KJ898961 - Synthetic construct Homo sapiens clone ccsbBroadEn_08355 PELO gene, encodes complete protein.
DQ587541 - Homo sapiens piRNA piR-54653, complete sequence.
JD229190 - Sequence 210214 from Patent EP1572962.
JD211964 - Sequence 192988 from Patent EP1572962.
JD315079 - Sequence 296103 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: CGI-17 , ENST00000274311.1, ENST00000274311.2, NM_015946, PELO , PELO_HUMAN, Q9BRX2, Q9GZS6, Q9Y306, uc317jep.1, uc317jep.2
UCSC ID: ENST00000274311.3_4
RefSeq Accession: NM_015946.5
Protein: Q9BRX2 (aka PELO_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.