Human Gene PEX5 (ENST00000675855.1_6) from GENCODE V47lift37
  Description: peroxisomal biogenesis factor 5, transcript variant 24 (from RefSeq NM_001374647.2)
Gencode Transcript: ENST00000675855.1_6
Gencode Gene: ENSG00000139197.11_19
Transcript (Including UTRs)
   Position: hg19 chr12:7,342,282-7,364,055 Size: 21,774 Total Exon Count: 16 Strand: +
Coding Region
   Position: hg19 chr12:7,342,974-7,362,819 Size: 19,846 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:7,342,282-7,364,055)mRNA (may differ from genome)Protein (639 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PEX5_HUMAN
DESCRIPTION: RecName: Full=Peroxisomal targeting signal 1 receptor; Short=PTS1 receptor; Short=PTS1R; AltName: Full=PTS1-BP; AltName: Full=Peroxin-5; AltName: Full=Peroxisomal C-terminal targeting signal import receptor; AltName: Full=Peroxisome receptor 1;
FUNCTION: Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import.
SUBUNIT: Interacts with PEX7 and PEX13 (By similarity). Interacts with PEX12 and PEX14. Interacts (Cys-linked ubiquitinated) with ZFAND6.
INTERACTION: O00623:PEX12; NbExp=3; IntAct=EBI-597835, EBI-594836;
SUBCELLULAR LOCATION: Cytoplasm. Peroxisome membrane; Peripheral membrane protein. Note=Its distribution appears to be dynamic. It is probably a cycling receptor found mainly in the cytoplasm and as well associated to the peroxisomal membrane through a docking factor (PEX13).
TISSUE SPECIFICITY: Detected in heart, brain, placenta, lung, liver, skeletal muscle, kidney and pancreas.
DISEASE: Defects in PEX5 are a cause of adrenoleukodystrophy neonatal (NALD) [MIM:202370]. NALD is a peroxisome biogenesis disorder (PBD) characterized by the accumulation of very long- chain fatty acids, adrenal insufficiency and mental retardation. Inheritance is autosomal recessive.
DISEASE: Defects in PEX5 are a cause of Zellweger syndrome (ZWS) [MIM:214100]. ZWS is a fatal peroxisome biogenesis disorder characterized by dysmorphic facial features, hepatomegaly, ocular abnormalities, renal cysts, hearing impairment, profound psychomotor retardation, severe hypotonia and neonatal seizures. Death occurs within the first year of life.
DISEASE: Defects in PEX5 may be a cause of infantile Refsum disease (IRD) [MIM:266510]. IRD is a mild peroxisome biogenesis disorder (PBD). Clinical features include early onset, mental retardation, minor facial dysmorphism, retinopathy, sensorineural hearing deficit, hepatomegaly, osteoporosis, failure to thrive, and hypocholesterolemia. The biochemical abnormalities include accumulation of phytanic acid, very long chain fatty acids (VLCFA), di- and trihydroxycholestanoic acid and pipecolic acid.
SIMILARITY: Belongs to the peroxisomal targeting signal receptor family.
SIMILARITY: Contains 7 TPR repeats.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/PEX5";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PEX5
Diseases sorted by gene-association score: rhizomelic chondrodysplasia punctata, type 5* (1366), peroxisome biogenesis disorder 2b* (1230), peroxisome biogenesis disorder 2a* (919), neonatal adrenoleukodystrophy* (789), rhizomelic chondrodysplasia punctata* (439), peroxisome biogenesis disorder 1b* (185), peroxisome biogenesis disorders, zellweger syndrome spectrum* (100), zellweger syndrome (26), refsum disease (19), peroxisomal biogenesis disorders (16), adrenoleukodystrophy (13), mulibrey nanism (12), peroxisomal disease (11), peroxisomal acyl-coa oxidase deficiency (10), primary hyperoxaluria (9), rhizomelic chondrodysplasia punctata, type 3 (8), peroxisome disorders (7), chondrodysplasia punctata syndrome (7), d-bifunctional protein deficiency (6), rhizomelic chondrodysplasia punctata, type 2 (6), hyperlysinemia (6), x-linked chondrodysplasia punctata (6), cerebral degeneration (5), rhizomelic chondrodysplasia punctata, type 1 (4), inherited metabolic disorder (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -29.6081-0.365 Picture PostScript Text
3' UTR -429.901236-0.348 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR024111 - PTS1R_family
IPR001440 - TPR-1
IPR013026 - TPR-contain_dom
IPR011990 - TPR-like_helical
IPR019734 - TPR_repeat

Pfam Domains:
PF13176 - Tetratricopeptide repeat
PF13181 - Tetratricopeptide repeat
PF13374 - Tetratricopeptide repeat
PF13432 - Tetratricopeptide repeat

SCOP Domains:
81901 - HCP-like
48439 - Protein prenylyltransferase
48452 - TPR-like
47157 - Mitochondrial import receptor subunit Tom20

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1FCH - X-ray MuPIT 2C0L - X-ray MuPIT 2C0M - X-ray MuPIT 2J9Q - X-ray MuPIT 2W84 - NMR MuPIT 3R9A - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P50542
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000268 peroxisome targeting sequence binding
GO:0005052 peroxisome matrix targeting signal-1 binding
GO:0005515 protein binding
GO:0008022 protein C-terminus binding
GO:0019899 enzyme binding
GO:0031267 small GTPase binding
GO:0047485 protein N-terminus binding

Biological Process:
GO:0006625 protein targeting to peroxisome
GO:0015031 protein transport
GO:0016558 protein import into peroxisome matrix
GO:0016560 protein import into peroxisome matrix, docking
GO:0016561 protein import into peroxisome matrix, translocation
GO:0016567 protein ubiquitination
GO:0045046 protein import into peroxisome membrane
GO:0051262 protein tetramerization
GO:1901094 negative regulation of protein homotetramerization

Cellular Component:
GO:0005622 intracellular
GO:0005737 cytoplasm
GO:0005777 peroxisome
GO:0005778 peroxisomal membrane
GO:0005782 peroxisomal matrix
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0016020 membrane
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  AK292256 - Homo sapiens cDNA FLJ78290 complete cds, highly similar to H.sapiens mRNA for peroxisomal C-terminal targeting signal import receptor.
Z48054 - H.sapiens mRNA for peroxisomal targeting signal 1 (SKL type) receptor.
AK299105 - Homo sapiens cDNA FLJ51948 complete cds, highly similar to Peroxisomal targeting signal 1 receptor.
AK302742 - Homo sapiens cDNA FLJ52372 complete cds, highly similar to Peroxisomal targeting signal 1 receptor.
AK312317 - Homo sapiens cDNA, FLJ92625.
AK316250 - Homo sapiens cDNA, FLJ79149 complete cds, highly similar to Peroxisomal targeting signal 1 receptor.
AK225126 - Homo sapiens mRNA for Peroxisomal targeting signal 1 receptor variant, clone: CBL05087.
AK303515 - Homo sapiens cDNA FLJ56404 complete cds, highly similar to Peroxisomal targeting signal 1 receptor.
X84899 - H.sapiens mRNA for peroxisomal C-terminal targeting signal import receptor.
BC010621 - Homo sapiens peroxisomal biogenesis factor 5, mRNA (cDNA clone MGC:9180 IMAGE:3872822), complete cds.
U19721 - Human peroxisomal targeting signal receptor 1 (PXR1) mRNA, complete cds.
JD466178 - Sequence 447202 from Patent EP1572962.
AB527550 - Synthetic construct DNA, clone: pF1KB6136, Homo sapiens PEX5 gene for peroxisomal biogenesis factor 5, without stop codon, in Flexi system.
DQ891142 - Synthetic construct clone IMAGE:100003772; FLH169688.01X; RZPDo839F0196D peroxisomal biogenesis factor 5 (PEX5) gene, encodes complete protein.
DQ894321 - Synthetic construct Homo sapiens clone IMAGE:100008781; FLH169684.01L; RZPDo839F0195D peroxisomal biogenesis factor 5 (PEX5) gene, encodes complete protein.
CU679763 - Synthetic construct Homo sapiens gateway clone IMAGE:100019966 5' read PEX5 mRNA.
KJ897433 - Synthetic construct Homo sapiens clone ccsbBroadEn_06827 PEX5 gene, encodes complete protein.
KU178292 - Homo sapiens peroxisomal biogenesis factor 5 isoform 1 (PEX5) mRNA, partial cds.
KU178293 - Homo sapiens peroxisomal biogenesis factor 5 isoform 2 (PEX5) mRNA, partial cds.
KU178294 - Homo sapiens peroxisomal biogenesis factor 5 isoform 3 (PEX5) mRNA, partial cds.
KU178295 - Homo sapiens peroxisomal biogenesis factor 5 isoform 4 (PEX5) mRNA, complete cds, alternatively spliced.
KU178296 - Homo sapiens peroxisomal biogenesis factor 5 isoform 5 (PEX5) mRNA, complete cds, alternatively spliced.
AK301700 - Homo sapiens cDNA FLJ50721 complete cds, highly similar to Peroxisomal targeting signal 1 receptor.
AK299534 - Homo sapiens cDNA FLJ50634 complete cds, highly similar to Peroxisomal targeting signal 1 receptor.
DQ596687 - Homo sapiens piRNA piR-34753, complete sequence.
DQ600153 - Homo sapiens piRNA piR-38219, complete sequence.
JD244308 - Sequence 225332 from Patent EP1572962.
JD086011 - Sequence 67035 from Patent EP1572962.
JD090369 - Sequence 71393 from Patent EP1572962.
JD339937 - Sequence 320961 from Patent EP1572962.
JD362181 - Sequence 343205 from Patent EP1572962.
JD218540 - Sequence 199564 from Patent EP1572962.
JD218541 - Sequence 199565 from Patent EP1572962.
JD196929 - Sequence 177953 from Patent EP1572962.
JD406356 - Sequence 387380 from Patent EP1572962.
JD550177 - Sequence 531201 from Patent EP1572962.
JD199751 - Sequence 180775 from Patent EP1572962.
JD501594 - Sequence 482618 from Patent EP1572962.
JD048695 - Sequence 29719 from Patent EP1572962.
JD343008 - Sequence 324032 from Patent EP1572962.
JD234807 - Sequence 215831 from Patent EP1572962.
JD162112 - Sequence 143136 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P50542 (Reactome details) participates in the following event(s):

R-HSA-9033478 USP9X hydrolyzes Ub:PEX5S yielding PEX5S and Ubiquitin
R-HSA-9033233 PEX5S,L binds cargo proteins containing PTS1
R-HSA-9033526 USP9X binds Ub:PEX5S
R-HSA-8953917 PEX2:PEX10:PEX12 binds PEX5S,L (in PEX5S:PEX13:PEX14) and Ub:UBE2D1,2,3
R-HSA-9033236 PEX5S,L:Cargo binds PEX13:PEX14 of PEX13:PEX14:PEX2:PEX10:PEX12 (Docking and Translocation Complex)
R-HSA-8953946 PEX2:PEX10:PEX12 monoubiquitinates PEX5S,L at cysteine-11
R-HSA-9033533 Ub:PEX5S,L (in PEX2:PEX10:PEX12:Ub:PEX5S:PEX13:PEX14) binds PEX1:PEX6:PEX26 and ZFAND6
R-HSA-9033241 Peroxisomal protein import
R-HSA-392499 Metabolism of proteins
R-HSA-8866654 E3 ubiquitin ligases ubiquitinate target proteins
R-HSA-8852135 Protein ubiquitination
R-HSA-597592 Post-translational protein modification
R-HSA-9033240 PEX5L binds PEX7:Cargo protein
R-HSA-9033491 USP9X hydrolyzes Ub:PEX5L yielding PEX5L and Ubiquitin
R-HSA-9033238 PEX5L:PEX7:Cargo binds PEX13:PEX14 of PEX13:PEX14:PEX2:PEX10:PEX12 (Docking and Translocation Complex)
R-HSA-9033233 PEX5S,L binds cargo proteins containing PTS1
R-HSA-9033527 PEX2:PEX10:PEX12 binds PEX5L (in PEX5L:PEX7:PEX13:PEX14:PEX2:PEX10:PEX12) and Ub:UBE2D1,2,3
R-HSA-9033509 USP9X binds Ub:PEX5L
R-HSA-9033236 PEX5S,L:Cargo binds PEX13:PEX14 of PEX13:PEX14:PEX2:PEX10:PEX12 (Docking and Translocation Complex)
R-HSA-9033485 PEX2:PEX10:PEX12 monoubiquitinates PEX5L at cysteine-11
R-HSA-8953917 PEX2:PEX10:PEX12 binds PEX5S,L (in PEX5S:PEX13:PEX14) and Ub:UBE2D1,2,3
R-HSA-9033516 Ub:PEX5L (in PEX2:PEX10:PEX12:Ub:PEX5L:PEX7:PEX13:PEX14) binds PEX1:PEX6:PEX26 and ZFAND6
R-HSA-8953946 PEX2:PEX10:PEX12 monoubiquitinates PEX5S,L at cysteine-11
R-HSA-9033533 Ub:PEX5S,L (in PEX2:PEX10:PEX12:Ub:PEX5S:PEX13:PEX14) binds PEX1:PEX6:PEX26 and ZFAND6
R-HSA-9033241 Peroxisomal protein import
R-HSA-392499 Metabolism of proteins
R-HSA-8866654 E3 ubiquitin ligases ubiquitinate target proteins
R-HSA-8852135 Protein ubiquitination
R-HSA-597592 Post-translational protein modification

-  Other Names for This Gene
  Alternate Gene Symbols: A8K891, B4DZ45, B7ZAD5, D3DUT8, NM_001374647, P50542, PEX5 , PEX5_HUMAN, PXR1 , Q15115, Q15266, Q96FN7, uc330aid.1, uc330aid.2
UCSC ID: ENST00000675855.1_6
RefSeq Accession: NM_001351132.2
Protein: P50542 (aka PEX5_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene PEX5:
pbd (Zellweger Spectrum Disorder)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.